RNA–Protein interactions for RNA: ENST00000452973.6

VTA1-203, Transcript of vesicle trafficking 1, humanhuman

TSL 2 BASIC

Gene VTA1, Length 3,177 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-203ENST00000452973 C3orf20Q8ND61 904 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 EXD1Q8NHP7 514 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 ZMAT2Q96NC0 199 aaKnown RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 ZNF518BQ9C0D4 1074 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 NXF3Q9H4D5 531 aaKnown RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 FAM49BQ9NUQ9 324 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 SAE1Q9UBE0 346 aaPredicted RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 UNCXA6NJT0 531 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 TREHO43280 583 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 ITGBL1O95965 494 aaPredicted RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 HOXA11P31270 313 aaPredicted RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 MAP2K5Q13163 448 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 PPP1R2P3Q6NXS1 205 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 LRIG3Q6UXM1 1119 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 CXorf38Q8TB03 319 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 MAIP1Q8WWC4 291 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 LPIN3Q9BQK8 851 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 PABPC3Q9H361 631 aaKnown RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 TUBGCP4Q9UGJ1 667 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 PARP2Q9UGN5 583 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 ZNF148Q9UQR1 794 aa12.44□□□□□ -0.42
VTA1-203ENST00000452973 PIN4Q9Y237 131 aaKnown RBP12.44□□□□□ -0.42
VTA1-203ENST00000452973 ANK1P16157 1881 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 HMGB1P1B2RPK0 211 aaPredicted RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 ACSL3O95573 720 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 MAGOHP61326 146 aaKnown RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 KLF1Q13351 362 aaPredicted RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 TAB3Q8N5C8 712 aaPredicted RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 C12orf50Q8NA57 414 aaPredicted RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 ATL2Q8NHH9 583 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 KAT2BQ92831 832 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 FAM107BQ9H098 131 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 RRN3P2A6NIE6 340 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 CAND2O75155 1236 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 ATF2P15336 505 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 ITGA8P53708 1063 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 YARSP54577 528 aaKnown RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 MFSD10Q14728 455 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 FAM102AQ5T9C2 384 aaPredicted RBP12.43□□□□□ -0.42
VTA1-203ENST00000452973 ACOT1Q86TX2 421 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 ZNF410Q86VK4 478 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 BCAS4Q8TDM0 211 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 TMEM40Q8WWA1 233 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 ART4Q93070 314 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 SLITRK1Q96PX8 696 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 ADAMTS10Q9H324 1103 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 C10orf88Q9H8K7 445 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 STRIP2Q9ULQ0 834 aa12.43□□□□□ -0.42
VTA1-203ENST00000452973 TCRBV5S1A1TA0A578 114 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 A6NJR5 290 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 HCRTO43612 131 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 IFNB1P01574 187 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 PAEPP09466 180 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ZSCAN5DPP0CG00 497 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 CHKAP35790 457 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 PIGHQ14442 188 aaPredicted RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 CDO1Q16878 200 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 FAM182AQ5T1J6 154 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 RCOR2Q8IZ40 523 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 C7orf31Q8N865 590 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 RUNDC3BQ96NL0 473 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 DDX23Q9BUQ8 820 aaKnown RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 EPB41L4BQ9H329 900 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 DNPEPQ9ULA0 475 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 GPR32O75388 356 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ETS1P14921 441 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ATICP31939 592 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 MYO1EQ12965 1108 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 SLC27A1Q6PCB7 646 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 GLIS1Q8NBF1 620 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 GRK7Q8WTQ7 553 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 HSPH1Q92598 858 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 RBM41Q96IZ5 413 aaKnown RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 MRPL45Q9BRJ2 306 aaKnown RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 TXLNGYQ9BZA5 131 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ANAPC5Q9UJX4 755 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 TSPAN16Q9UKR8 245 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ITGA11Q9UKX5 1188 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 BARX2Q9UMQ3 279 aaPredicted RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.42□□□□□ -0.42
VTA1-203ENST00000452973 GNEQ9Y223 722 aaKnown RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 TRIP11Q15643 1979 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 NRCAMQ92823 1304 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 ANKRD65E5RJM6 399 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 PDGFRBP09619 1106 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 CDH5P33151 784 aaPredicted RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 GRM5P41594 1212 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 TAF5Q15542 800 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 PPP1R15BQ5SWA1 713 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 SH3PXD2AQ5TCZ1 1133 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 OR6B2Q6IFH4 312 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 SPOCD1Q6ZMY3 1216 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 XYLT1Q86Y38 959 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 OR6B3Q8NGW1 331 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 SNF8Q96H20 258 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 GOLGA2P5Q9HBQ8 144 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 FEZ2Q9UHY8 353 aaPredicted RBP12.42□□□□□ -0.42
VTA1-203ENST00000452973 C2CD2Q9Y426 696 aa12.42□□□□□ -0.42
VTA1-203ENST00000452973 SIGLEC16A6NMB1 481 aa12.41□□□□□ -0.42
VTA1-203ENST00000452973 TULP2O00295 520 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms