RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 ZNF334Q9HCZ1 680 aaPredicted RBP8.39□□□□□ -1.07
VPS50-204ENST00000438395 TRPV5Q9NQA5 729 aa8.39□□□□□ -1.07
VPS50-204ENST00000438395 PRMT8Q9NR22 394 aaPredicted RBP8.39□□□□□ -1.07
VPS50-204ENST00000438395 THG1LQ9NWX6 298 aaKnown RBP8.39□□□□□ -1.07
VPS50-204ENST00000438395 CCDC39Q9UFE4 941 aa8.39□□□□□ -1.07
VPS50-204ENST00000438395 CDV3Q9UKY7 258 aaKnown RBP8.39□□□□□ -1.07
VPS50-204ENST00000438395 EXOC7Q9UPT5 735 aa8.39□□□□□ -1.07
VPS50-204ENST00000438395 FRYLO94915 3013 aa8.39□□□□□ -1.07
VPS50-204ENST00000438395 CACNA1IQ9P0X4 2223 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 MTMR11A4FU01 709 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SLC38A8A6NNN8 435 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 CHADO15335 359 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 MEFVO15553 781 aaPredicted RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 IL18RAPO95256 599 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ADH1CP00326 375 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 TIMP2P16035 220 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 GAP43P17677 238 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 CCNE1P24864 410 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 GABRR2P28476 465 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 PNPLA4P41247 253 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ACOT2P49753 483 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 TAF6P49848 677 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ZNF131P52739 623 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 WDR4P57081 412 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 SMARCB1Q12824 385 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 PTPAQ15257 358 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SF3A1Q15459 793 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 ZBTB6Q15916 424 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SV2CQ496J9 727 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SLC39A12Q504Y0 691 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ARHGAP29Q52LW3 1261 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ARSHQ5FYA8 562 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 C9orf57Q5W0N0 161 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 CENPPQ6IPU0 288 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 PRR23BQ6ZRT6 265 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 DNAJB7Q7Z6W7 309 aaPredicted RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 BPHLQ86WA6 291 aaPredicted RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 DCP1BQ8IZD4 617 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 MAML2Q8IZL2 1156 aaPredicted RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 SYCP3Q8IZU3 236 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 DCLK2Q8N568 766 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SUMF1Q8NBK3 374 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ZBTB44Q8NCP5 570 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 NOC3LQ8WTT2 800 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 PSMG2Q969U7 264 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 HVCN1Q96D96 273 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ZSWIM3Q96MP5 696 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 EPC1Q9H2F5 836 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 MRPL44Q9H9J2 332 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 LMAN1LQ9HAT1 526 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ABI2Q9NYB9 513 aaPredicted RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 HSFX1Q9UBD0 423 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 SEL1LQ9UBV2 794 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 STK17AQ9UEE5 414 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ZMYM5Q9UJ78 669 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 AGO2Q9UKV8 859 aaKnown RBP8.38□□□□□ -1.07
VPS50-204ENST00000438395 C2CD2Q9Y426 696 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 VWA8A3KMH1 1905 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 ACACBO00763 2458 aa8.38□□□□□ -1.07
VPS50-204ENST00000438395 MYH15Q9Y2K3 1946 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 PRR5-ARHGAP8B1AHC4 643 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CYB561D2O14569 222 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 PPEF2O14830 753 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 HUS1O60921 280 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 SOAT2O75908 522 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 NMT1P30419 496 aaKnown RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 AVPR1AP37288 418 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CXCL12P48061 93 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 ARHGAP8P85298 464 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 TFAMQ00059 246 aaKnown RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 GTF2BQ00403 316 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 BFSP1Q12934 665 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 NR6A1Q15406 480 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 RSPO4Q2I0M5 234 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 ZC2HC1CQ53FD0 456 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 DGKKQ5KSL6 1271 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 RRAGBQ5VZM2 374 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 LAIR1Q6GTX8 287 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CC2D1AQ6P1N0 951 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 STXBP4Q6ZWJ1 553 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CEP68Q76N32 757 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 DYMQ7RTS9 669 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 RALGPS2Q86X27 583 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 SFR1Q86XK3 245 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 ARID3BQ8IVW6 561 aaPredicted RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 SPEM1Q8N4L4 309 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 TTC9BQ8N6N2 239 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CELF5Q8N6W0 485 aaKnown RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 SPPL2BQ8TCT7 592 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 C2orf15Q8WU43 125 aaKnown RBP8.37□□□□□ -1.07
VPS50-204ENST00000438395 KCNN1Q92952 543 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 EXOC4Q96A65 974 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CDK15Q96Q40 435 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 ACCSQ96QU6 501 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 HAPLN2Q9GZV7 340 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 ZFAND3Q9H8U3 227 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 BLOC1S4Q9NUP1 217 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 DPP3Q9NY33 737 aa8.37□□□□□ -1.07
VPS50-204ENST00000438395 CPSF3Q9UKF6 684 aaKnown RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms