RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 KRT35Q92764 455 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 WDCPQ9H6R7 721 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 ADGRB3O60242 1522 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 SNRPAP09012 282 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 SLC29A2Q14542 456 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 LRIG3Q6UXM1 1119 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 BARGINQ6ZT62 677 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 GALNT4Q8N4A0 578 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 FAM136AQ96C01 138 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 GPRASP2Q96D09 838 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 MTIF3Q9H2K0 278 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CAPN10Q9HC96 672 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 GPATCH2LQ9NWQ4 482 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 ZBTB39O15060 712 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CAP2P40123 477 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 BTKQ06187 659 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 BLOC1S5Q8TDH9 187 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CYGBQ8WWM9 190 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 INPP5DQ92835 1189 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 ERP44Q9BS26 406 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 B3GAT3O94766 335 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 PTPN7P35236 360 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 ACAD10Q6JQN1 1059 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CERKQ8TCT0 537 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 MKNK1Q9BUB5 465 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 RRN3P2A6NIE6 340 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CSDE1O75534 798 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 SRP72O76094 671 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CD44P16070 742 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 MZF1P28698 734 aaPredicted RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 SOAT1P35610 550 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 ALDH7A1P49419 539 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 AARS2Q5JTZ9 985 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 TDRD10Q5VZ19 366 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 MDM1Q8TC05 714 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 TFB1MQ8WVM0 346 aaKnown RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 C17orf80Q9BSJ5 609 aa17.9■□□□□ 0.46
PTPRF-209ENST00000438120 CINPQ9BW66 212 aaPredicted RBP17.9■□□□□ 0.46
PTPRF-209ENST00000438120 VCAM1P19320 739 aa17.89■□□□□ 0.46
PTPRF-209ENST00000438120 CDH18Q13634 790 aa17.89■□□□□ 0.46
PTPRF-209ENST00000438120 ARMC2Q8NEN0 867 aa17.89■□□□□ 0.46
PTPRF-209ENST00000438120 BRD8Q9H0E9 1235 aa17.89■□□□□ 0.46
PTPRF-209ENST00000438120 PNMA8BQ9ULN7 279 aaPredicted RBP17.89■□□□□ 0.46
PTPRF-209ENST00000438120 FAM32AQ9Y421 112 aaKnown RBP17.89■□□□□ 0.46
PTPRF-209ENST00000438120 AP1G2O75843 785 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 CTCFP49711 727 aaPredicted RBP17.89■□□□□ 0.45
PTPRF-209ENST00000438120 SEC24CP53992 1094 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 PLIN5Q00G26 463 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP17.89■□□□□ 0.457e-6■□□□□ 8.6
PTPRF-209ENST00000438120 TFRCP02786 760 aaKnown RBP17.89■□□□□ 0.45
PTPRF-209ENST00000438120 EPB42P16452 691 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 PON1P27169 355 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 FBXW10Q5XX13 1052 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 FAM162AQ96A26 154 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 GLT1D1Q96MS3 346 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 CBWD1Q9BRT8 395 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 FOXP2O15409 715 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 WNK4Q96J92 1243 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 RPRD1AQ96P16 312 aaPredicted RBP17.89■□□□□ 0.45
PTPRF-209ENST00000438120 ABCA6Q8N139 1617 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 GRIN3BO60391 1043 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 SOX10P56693 466 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 PPIL6Q8IXY8 311 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 CRLS1Q9UJA2 301 aa17.89■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF189O75820 626 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 KAT2BQ92831 832 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 MYO3AQ8NEV4 1616 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 LRG1P02750 347 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 RALBP11234 206 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 HDAC4P56524 1084 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 SEC16BQ96JE7 1060 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 DUSP10Q9Y6W6 482 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 NCF1BA6NI72 391 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 NCF1CA8MVU1 366 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 DDHD2O94830 711 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 ODC1P11926 461 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 NCF1P14598 390 aaPredicted RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 INTS5Q6P9B9 1019 aaKnown RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 RNF180Q86T96 592 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 PRPF39Q86UA1 669 aaKnown RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF677Q86XU0 584 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 ZNF555Q8NEP9 628 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 TPCN2Q8NHX9 752 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 EME1Q96AY2 570 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 SELENONQ9NZV5 590 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 EIF3HO15372 352 aaKnown RBP eCLIP17.88■□□□□ 0.452e-7■□□□□ 10.3
PTPRF-209ENST00000438120 SLC26A4O43511 780 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 CALML6Q8TD86 181 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 RUBCNQ92622 972 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 UBQLN1Q9UMX0 589 aaKnown RBP17.88■□□□□ 0.45
PTPRF-209ENST00000438120 RGS4P49798 205 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 OVGP1Q12889 678 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 KCTD10Q9H3F6 313 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 MANSC1Q9H8J5 431 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 SPATA31A5Q5VU36 1347 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 SPATA31A7Q8IWB4 1347 aa17.88■□□□□ 0.45
PTPRF-209ENST00000438120 B2RBV5 119 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 CAND2O75155 1236 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 TRIM65Q6PJ69 517 aa17.87■□□□□ 0.45
PTPRF-209ENST00000438120 DNAAF5Q86Y56 855 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms