RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 CYGBQ8WWM9 190 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SPATA16Q9BXB7 569 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SERHL2Q9H4I8 314 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SERHLQ9NQF3 203 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 DCTN4Q9UJW0 460 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SMIM11AP58511 58 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PICALMQ13492 652 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RBM43Q6ZSC3 357 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 DHX40Q8IX18 779 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 THEM5Q8N1Q8 247 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 GOLPH3Q9H4A6 298 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 AK5Q9Y6K8 562 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CAPN15O75808 1086 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ATP6V1C1P21283 382 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 EIF2B2P49770 351 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 VSNL1P62760 191 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 POLA2Q14181 598 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 TYSND1Q2T9J0 566 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 DEPDC4Q8N2C3 294 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ARMT1Q9H993 441 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PNPLA3Q9NST1 481 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PREX2Q70Z35 1606 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ANXA9O76027 345 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ATF6P18850 670 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PFKFB3Q16875 520 aaPredicted RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 FAM124BQ9H5Z6 455 aaPredicted RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 LMCD1Q9NZU5 365 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PCDHB2Q9Y5E7 798 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 XDHP47989 1333 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 A0A0D9SFI3 127 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CFBP00751 764 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ETFBP38117 255 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PDK2Q15119 407 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RWDD4Q6NW29 188 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 PRPF39Q86UA1 669 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 CATSPER3Q86XQ3 398 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RFT1Q96AA3 541 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CLIC4Q9Y696 253 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SYNCRIPO60506 623 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 DDHD2O94830 711 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 TCIRG1Q13488 830 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SLC15A2Q16348 729 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 DUOXA2Q1HG44 320 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SNAP47Q5SQN1 464 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 MROH9Q5TGP6 573 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 LRRC74BQ6ZQY2 392 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CCDC149Q6ZUS6 474 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 DPP10Q8N608 796 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SLC20A1Q8WUM9 679 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 COMMD8Q9NX08 183 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 RRN3Q9NYV6 651 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CDHR2Q9BYE9 1310 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 MAP3K4Q9Y6R4 1608 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 CCDC154A6NI56 674 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ACLYP53396 1101 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 DDR2Q16832 855 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SPATS1Q496A3 300 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 MPP4Q96JB8 637 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ZNF577Q9BSK1 485 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 FBXO2Q9UK22 296 aaPredicted RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 ASAP1Q9ULH1 1129 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 NSFL1CQ9UNZ2 370 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 TTC26A0AVF1 554 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SLC22A2O15244 555 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 NBNO60934 754 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 ABHD2P08910 425 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 PRIM2P49643 509 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SKP1P63208 163 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 SCAF8Q9UPN6 1271 aaKnown RBP7.47□□□□□ -1.21
VPS53-204ENST00000437048 DMTF1Q9Y222 760 aa7.47□□□□□ -1.21
VPS53-204ENST00000437048 TMEM114B3SHH9 223 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 AKT1P31749 480 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 SERPINB5P36952 375 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 FAM172AQ8WUF8 416 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 SLC25A23Q9BV35 468 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 PRKD2Q9BZL6 878 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 POLD4Q9HCU8 107 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 MYH6P13533 1939 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 ATP6V1G2O95670 118 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 HIST1H2AGP0C0S8 130 aaPredicted RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 HIST1H2ADP20671 130 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 TUFMP49411 452 aaKnown RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 HNMTP50135 292 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 ARSEP51690 589 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 SPIRE1Q08AE8 756 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 HIST1H2AHQ96KK5 128 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 HIST1H2AJQ99878 128 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 H2AFJQ9BTM1 129 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 TMED5Q9Y3A6 229 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 LRRIQ4A6NIV6 560 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 ZNF862O60290 1169 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 KRT34O76011 436 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 CDH3P22223 829 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 TPP2P29144 1249 aaPredicted RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 FAUP35544 74 aaKnown RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 RPS8P62241 208 aaKnown RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 ZNF846Q147U1 533 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 PTGES3Q15185 160 aaKnown RBP7.46□□□□□ -1.21
VPS53-204ENST00000437048 ZFP42Q96MM3 310 aa7.46□□□□□ -1.21
VPS53-204ENST00000437048 MYLK2Q9H1R3 596 aa7.46□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms