RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 MUTYHQ9UIF7 546 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 MRPS23Q9Y3D9 190 aaKnown RBP12.25□□□□□ -0.45
COL28A1-203ENST00000435823 ASB3Q9Y575 518 aa12.25□□□□□ -0.45
COL28A1-203ENST00000435823 ZFP37Q9Y6Q3 630 aaPredicted RBP12.25□□□□□ -0.45
COL28A1-203ENST00000435823 A8MXQ7 604 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 PI4K2BG5E9Z4 385 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 FGFR1OPO95684 399 aaKnown RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 GNA14O95837 355 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 ASS1P00966 412 aaKnown RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 PDGFRBP09619 1106 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 HAPLN1P10915 354 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 STX17P56962 302 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 MCCD1P59942 119 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 PTPN21Q16825 1174 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 TTI2Q6NXR4 508 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 SCARA5Q6ZMJ2 495 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 C4orf50Q6ZRC1 276 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 FRMD5Q7Z6J6 570 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 SPATA2LQ8IUW3 424 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 TTC9BQ8N6N2 239 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 MLKLQ8NB16 471 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 KHSRPQ92945 711 aaKnown RBP eCLIP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 MYADMQ96S97 322 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 MRPL45Q9BRJ2 306 aaKnown RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 SMYD3Q9H7B4 428 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 ABCB6Q9NP58 842 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 AVENQ9NQS1 362 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-203ENST00000435823 ASAH2Q9NR71 780 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 TMLHEQ9NVH6 421 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 CEP72Q9P209 647 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 EPS15L1Q9UBC2 864 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 LIMD1Q9UGP4 676 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 GTF3C4Q9UKN8 822 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 CDH7Q9ULB5 785 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 C5orf42Q9H799 3197 aa12.24□□□□□ -0.45
COL28A1-203ENST00000435823 MYBPHLA2RUH7 354 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 HCRTO43612 131 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 N4BP1O75113 896 aaKnown RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 SOAT2O75908 522 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 MBD3O95983 291 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 MYL4P12829 197 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 LAMP2P13473 410 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 TRIM21P19474 475 aaKnown RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 LMO2P25791 158 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 CDR1P51861 262 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 PSMC1P62191 440 aaKnown RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 RPL10AP62906 217 aaKnown RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 MTMR3Q13615 1198 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 TAF12Q16514 161 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 FAM171BQ6P995 826 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 FBXL13Q8NEE6 735 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 ITFG1Q8TB96 612 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 TAS1R2Q8TE23 839 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 FGF13Q92913 245 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 PSMG2Q969U7 264 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 FUBP3Q96I24 572 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 PKMYT1Q99640 499 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 DUSP9Q99956 384 aaKnown RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 PI4K2AQ9BTU6 479 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 C1QTNF1Q9BXJ1 281 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 DNAJC25Q9H1X3 360 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 EPHX3Q9H6B9 360 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 IGSF9Q9P2J2 1179 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 MAGEC2Q9UBF1 373 aaPredicted RBP12.23□□□□□ -0.45
COL28A1-203ENST00000435823 DACH1Q9UI36 760 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 RWDD2AQ9UIY3 292 aa12.23□□□□□ -0.45
COL28A1-203ENST00000435823 MICAL2O94851 1124 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 FGF19O95750 216 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 RAP1GAPP47736 663 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 CDH8P55286 799 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 NOP14P78316 857 aaKnown RBP12.22□□□□□ -0.45
COL28A1-203ENST00000435823 CYP27A1Q02318 531 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 CFAP221Q4G0U5 840 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 WDR44Q5JSH3 913 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 SPOPLQ6IQ16 392 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 MTSS1LQ765P7 747 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 DNAJB7Q7Z6W7 309 aaPredicted RBP12.22□□□□□ -0.45
COL28A1-203ENST00000435823 HS6ST3Q8IZP7 471 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 MYCBPAPQ8TBZ2 947 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 GPT2Q8TD30 523 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 ING5Q8WYH8 240 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 NXPE3Q969Y0 559 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 MYLPFQ96A32 169 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 TNIP3Q96KP6 325 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 GCNAQ96QF7 691 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 LPIN3Q9BQK8 851 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 SRRTQ9BXP5 876 aaKnown RBP12.22□□□□□ -0.45
COL28A1-203ENST00000435823 DNAI2Q9GZS0 605 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 NIF3L1Q9GZT8 377 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL28A1-203ENST00000435823 GDE1Q9NZC3 331 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 SORCS3Q9UPU3 1222 aa12.22□□□□□ -0.45
COL28A1-203ENST00000435823 DOCK6Q96HP0 2047 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 ATP8B3O60423 1300 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 ATP2C2O75185 946 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 ASGR2P07307 311 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 CSH1P0DML2 217 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 CSH2P0DML3 217 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 CCDC192P0DO97 292 aa12.21□□□□□ -0.45
COL28A1-203ENST00000435823 CEBPBP17676 345 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms