RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 FAM47EQ6ZV65 393 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ERICH1Q86X53 443 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 VSIG1Q86XK7 387 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PPIL6Q8IXY8 311 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ZBED8Q8IZ13 594 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 GLIS1Q8NBF1 620 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PRCCQ92733 491 aaPredicted RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 INPP5DQ92835 1189 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 STAMBPL1Q96FJ0 436 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 FAXDC2Q96IV6 333 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ANKRD27Q96NW4 1050 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 TMEM237Q96Q45 408 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 NIF3L1Q9GZT8 377 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 TELO2Q9Y4R8 837 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 KIAA1217Q5T5P2 1943 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 IGKV6D-21A0A0A0MT36 114 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 LRRD1A4D1F6 860 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 SGK1O00141 431 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 TYROBPO43914 113 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 KRT7P08729 469 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 TCF4P15884 667 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 CA4P22748 312 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 RPS12P25398 132 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 RASSF2P50749 326 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ARL4CP56559 192 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PLCB3Q01970 1234 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 DNAJC3Q13217 504 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 HIF1AQ16665 826 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 HADHQ16836 314 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 KLHL38Q2WGJ6 581 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 KIF2BQ8N4N8 673 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ATP11CQ8NB49 1132 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 DNERQ8NFT8 737 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ZNF398Q8TD17 642 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ALKBH8Q96BT7 664 aaKnown RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 LRRC37BQ96QE4 947 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 SH3GL3Q99963 347 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 MYLK2Q9H1R3 596 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 LRMDAQ9H2I8 198 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 ETNK1Q9HBU6 452 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 BATF3Q9NR55 127 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 PICK1Q9NRD5 415 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 STK38LQ9Y2H1 464 aa11.89□□□□□ -0.51
USP4-205ENST00000431357 FARP1Q9Y4F1 1045 aaPredicted RBP11.89□□□□□ -0.51
USP4-205ENST00000431357 ETS1P14921 441 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 OGDHQ02218 1023 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 TMEM132BQ14DG7 1078 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 DUOXA2Q1HG44 320 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 WDR72Q3MJ13 1102 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 GPAT2Q6NUI2 795 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 THNSL1Q8IYQ7 743 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 MAB21L3Q8N8X9 362 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 ANKLE1Q8NAG6 615 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 FNIP1Q8TF40 1166 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 MRPL4Q9BYD3 311 aaKnown RBP11.88□□□□□ -0.51
USP4-205ENST00000431357 CISHQ9NSE2 258 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 ETAA1Q9NY74 926 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 ZNF112Q9UJU3 913 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 SNCAIPQ9Y6H5 919 aa11.88□□□□□ -0.51
USP4-205ENST00000431357 HNRNPCL1O60812 293 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 TOM1L1O75674 476 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 CST3P01034 146 aaPredicted RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 RPA3P35244 121 aaPredicted RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 CLNS1AP54105 237 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 MYO1EQ12965 1108 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 TRPC3Q13507 836 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 FASTKD3Q14CZ7 662 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 TARBP2Q15633 366 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 ACCSLQ4AC99 568 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 FYB2Q5VWT5 728 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 AP1ARQ63HQ0 302 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 BBS12Q6ZW61 710 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 PYROXD1Q8WU10 500 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 NSMCE1Q8WV22 266 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 JDP2Q8WYK2 163 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 LHX5Q9H2C1 402 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 WDR35Q9P2L0 1181 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 ZMYND8Q9ULU4 1186 aaPredicted RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 AGTPBP1Q9UPW5 1226 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 L3MBTL1Q9Y468 752 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 PHIPQ8WWQ0 1821 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 DOCK1Q14185 1865 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 MYH9P35579 1960 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 SIGLEC16A6NMB1 481 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 E7ESA3 106 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 MED7O43513 233 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 IFNB1P01574 187 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 DPEP1P16444 411 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 PTPRAP18433 802 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 IBSPP21815 317 aaPredicted RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 KCNA3P22001 575 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 CCNG1P51959 295 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 MYL6P60660 151 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 SP2Q02086 613 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 RNASELQ05823 741 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 CAPSQ13938 189 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 SEPT7Q16181 437 aaKnown RBP11.87□□□□□ -0.51
USP4-205ENST00000431357 TAZQ16635 292 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 SLC45A4Q5BKX6 768 aa11.87□□□□□ -0.51
USP4-205ENST00000431357 FAM160B1Q5W0V3 765 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms