RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 AAASQ9NRG9 546 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 KCNH7Q9NS40 1196 aa16.04■□□□□ 0.16
PTPRF-206ENST00000429895 STX7O15400 261 aaKnown RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 PTK6Q13882 451 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 MIB1Q86YT6 1006 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 KIAA2013Q8IYS2 634 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 KAT2BQ92831 832 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 FAM136AQ96C01 138 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 OLFML3Q9NRN5 406 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 CAND2O75155 1236 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 PHKG1Q16816 387 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 ALFQ53S48 1182 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 PCYOX1LQ8NBM8 494 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 FAM151AQ8WW52 585 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 COLEC11Q9BWP8 271 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 NIF3L1Q9GZT8 377 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 NSMCE4AQ9NXX6 385 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 GTF2A1LQ9UNN4 478 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 CFAP73A6NFT4 308 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 PHF20L1A8MW92 1017 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 MAP3K6O95382 1288 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 PLOD1Q02809 727 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 STK4Q13043 487 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 DENND5BQ6ZUT9 1274 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 TMEM169Q96HH4 297 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 RSAD1Q9HA92 442 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 NFKBIL1Q9UBC1 381 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 CAB39Q9Y376 341 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 SAMD9LQ8IVG5 1584 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 SRGNP10124 158 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 ITGA8P53708 1063 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 ATN1P54259 1190 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 TFB1MQ8WVM0 346 aaKnown RBP16.03■□□□□ 0.16
PTPRF-206ENST00000429895 WEE1P30291 646 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 SLC11A2P49281 568 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 BBS7Q8IWZ6 715 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 ADSSL1Q8N142 457 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 CCSER1Q9C0I3 900 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 JMJD4Q9H9V9 463 aa16.03■□□□□ 0.16
PTPRF-206ENST00000429895 IGSF9BQ9UPX0 1349 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 RRN3P2A6NIE6 340 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 F8W810 466 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 LAMC2Q13753 1193 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 CHI3L2Q15782 390 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 CHST13Q8NET6 341 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 CELF4Q9BZC1 486 aaKnown RBP16.02■□□□□ 0.16
PTPRF-206ENST00000429895 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.02■□□□□ 0.16
PTPRF-206ENST00000429895 DDIT4Q9NX09 232 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 S100A5P33763 92 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 MAGEA4P43358 317 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 SERPINB4P48594 390 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 KIF2CQ99661 725 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 KCTD10Q9H3F6 313 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 TRMT6Q9UJA5 497 aaKnown RBP16.02■□□□□ 0.16
PTPRF-206ENST00000429895 ZNF521Q96K83 1311 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 KCNJ1P48048 391 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 TMEM132BQ14DG7 1078 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 THAP11Q96EK4 314 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 CPB2Q96IY4 423 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 GOLPH3Q9H4A6 298 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 RIC8BQ9NVN3 520 aa16.02■□□□□ 0.16
PTPRF-206ENST00000429895 ZC3H11AO75152 810 aaKnown RBP eCLIP16.02■□□□□ 0.15
PTPRF-206ENST00000429895 CCDC15Q0P6D6 951 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 POLD3Q15054 466 aaPredicted RBP16.02■□□□□ 0.15
PTPRF-206ENST00000429895 CLEC16AQ2KHT3 1053 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 GTF3C2Q8WUA4 911 aaPredicted RBP16.02■□□□□ 0.15
PTPRF-206ENST00000429895 CYFIP2Q96F07 1278 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 VWA5AO00534 786 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 AP1G2O75843 785 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 RASA1P20936 1047 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 MAPRE1Q15691 268 aaKnown RBP16.02■□□□□ 0.15
PTPRF-206ENST00000429895 PRPF39Q86UA1 669 aaKnown RBP16.02■□□□□ 0.15
PTPRF-206ENST00000429895 PALMDQ9NP74 551 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 SCUBE2Q9NQ36 999 aa16.02■□□□□ 0.15
PTPRF-206ENST00000429895 EVPLLA8MZ36 301 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 FEZF2Q8TBJ5 459 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 TSEN34Q9BSV6 310 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 PCDHB2Q9Y5E7 798 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 NRKQ7Z2Y5 1582 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 ACO1P21399 889 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 MDH1P40925 334 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 HHIPL2Q6UWX4 724 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 CCDC81Q6ZN84 652 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 LOC100653049A0A140TA62 436 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 F5H5T6 163 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 TBX3O15119 743 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 KRT34O76011 436 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 CHI3L1P36222 383 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 KRT78Q8N1N4 520 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 IGDCC4Q8TDY8 1250 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 PPP1R2P1Q96PQ5 205 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 KCND2Q9NZV8 630 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 RNF112Q9ULX5 631 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 C16orf96A6NNT2 1141 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 SNRPAP09012 282 aaKnown RBP16.01■□□□□ 0.15
PTPRF-206ENST00000429895 NAB2Q15742 525 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 NAPEPLDQ6IQ20 393 aa16.01■□□□□ 0.15
PTPRF-206ENST00000429895 ANKRD13AQ8IZ07 590 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms