RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 DDX43Q9NXZ2 648 aaKnown RBP15.62■□□□□ 0.09
SDC1-204ENST00000429035 L1RE1Q9UN81 338 aa15.62■□□□□ 0.09
SDC1-204ENST00000429035 R3HCC1Q9Y3T6 440 aaKnown RBP15.62■□□□□ 0.09
SDC1-204ENST00000429035 CACNA1AO00555 2505 aa15.62■□□□□ 0.09
SDC1-204ENST00000429035 SPAG17Q6Q759 2223 aa15.62■□□□□ 0.09
SDC1-204ENST00000429035 FRYLO94915 3013 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 HELZP42694 1942 aaKnown RBP15.61■□□□□ 0.09
SDC1-204ENST00000429035 ANAPC1Q9H1A4 1944 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 HUS1O60921 280 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 PRPF6O94906 941 aaKnown RBP15.61■□□□□ 0.09
SDC1-204ENST00000429035 LDHAP00338 332 aaKnown RBP15.61■□□□□ 0.09
SDC1-204ENST00000429035 MYL7Q01449 175 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 ITPRIPL2Q3MIP1 535 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 WDR44Q5JSH3 913 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 DGKKQ5KSL6 1271 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 TRIM68Q6AZZ1 485 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 LAIR1Q6GTX8 287 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 CEP68Q76N32 757 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 CMTM8Q8IZV2 173 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 PDCL2Q8N4E4 241 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 CSGALNACT2Q8N6G5 542 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 CELF5Q8N6W0 485 aaKnown RBP15.61■□□□□ 0.09
SDC1-204ENST00000429035 MRPS31Q92665 395 aaKnown RBP15.61■□□□□ 0.09
SDC1-204ENST00000429035 USP28Q96RU2 1077 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 SLC46A2Q9BY10 475 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 PARD6AQ9NPB6 346 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 DLL3Q9NYJ7 618 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 PCDHB13Q9Y5F0 798 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 SNX9Q9Y5X1 595 aa15.61■□□□□ 0.09
SDC1-204ENST00000429035 DNAH14Q0VDD8 3507 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 WDR87Q6ZQQ6 2873 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 CSH1P0DML2 217 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 CSH2P0DML3 217 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 SYT1P21579 422 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 GARTP22102 1010 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 MLLT6P55198 1093 aaPredicted RBP15.6■□□□□ 0.09
SDC1-204ENST00000429035 NLRP12P59046 1061 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 POU5F1Q01860 360 aaKnown RBP15.6■□□□□ 0.09
SDC1-204ENST00000429035 ALCAMQ13740 583 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 NFE2Q16621 373 aaPredicted RBP15.6■□□□□ 0.09
SDC1-204ENST00000429035 DDR2Q16832 855 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 CCDC142Q17RM4 750 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 INTS6LQ5JSJ4 861 aaKnown RBP15.6■□□□□ 0.09
SDC1-204ENST00000429035 TXNDC8Q6A555 127 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 SCN4BQ8IWT1 228 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 CCDC65Q8IXS2 484 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 ADGRF2Q8IZF7 708 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 ANKRD36BP1Q96IX9 119 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 EBF3Q9H4W6 596 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 PDE11AQ9HCR9 933 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 OLFML3Q9NRN5 406 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 GKN1Q9NS71 199 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 C2orf42Q9NWW7 574 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 ITGA11Q9UKX5 1188 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 CCL26Q9Y258 94 aa15.6■□□□□ 0.09
SDC1-204ENST00000429035 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.6■□□□□ 0.09
SDC1-204ENST00000429035 MYO16Q9Y6X6 1858 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 GREB1Q4ZG55 1949 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 A0A087X0B3 334 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 HCRTO43612 131 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 EXTL3O43909 919 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 KCNA4P22459 653 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 DDX6P26196 483 aaKnown RBP eCLIP15.59■□□□□ 0.09
SDC1-204ENST00000429035 STK38Q15208 465 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 CC2D1AQ6P1N0 951 aaPredicted RBP15.59■□□□□ 0.09
SDC1-204ENST00000429035 LONP2Q86WA8 852 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 OSTM1Q86WC4 334 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 SPATA2LQ8IUW3 424 aaPredicted RBP15.59■□□□□ 0.09
SDC1-204ENST00000429035 GPD1LQ8N335 351 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 LRRC52Q8N7C0 313 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 STRA6Q9BX79 667 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 KIF9Q9HAQ2 790 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 SDK1Q7Z5N4 2213 aa15.59■□□□□ 0.09
SDC1-204ENST00000429035 PTPRDP23468 1912 aa15.58■□□□□ 0.09
SDC1-204ENST00000429035 SPTBN2O15020 2390 aa15.58■□□□□ 0.09
SDC1-204ENST00000429035 PRR5-ARHGAP8B1AHC4 643 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 K7ESF4 209 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 CLSTN1O94985 981 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 TNNC2P02585 160 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 ARSAP15289 507 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 HMGA1P17096 107 aaKnown RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 SDHBP21912 280 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 CYP2F1P24903 491 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 HOXC13P31276 330 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 ATXN1P54253 815 aaKnown RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 PSMC1P62191 440 aaKnown RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 RPL10AP62906 217 aaKnown RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 ARHGAP8P85298 464 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 RUNX3Q13761 415 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 SCARA3Q6AZY7 606 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 STXBP4Q6ZWJ1 553 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 TMEM150AQ86TG1 271 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 TMEM86AQ8N2M4 240 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 LEO1Q8WVC0 666 aaPredicted RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 USP13Q92995 863 aaPredicted RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 HPS3Q969F9 1004 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 TMEM206Q9H813 350 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 HPS4Q9NQG7 708 aa15.58■□□□□ 0.08
SDC1-204ENST00000429035 UXTQ9UBK9 157 aaPredicted RBP15.58■□□□□ 0.08
SDC1-204ENST00000429035 ZMYM5Q9UJ78 669 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms