RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 DPH1Q9BZG8 443 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 MKNK2Q9HBH9 465 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 EPB41L4AQ9HCS5 686 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 HERC5Q9UII4 1024 aaKnown RBP5.66□□□□□ -1.5
VPS13A-207ENST00000419472 ZNF711Q9Y462 761 aa5.66□□□□□ -1.5
VPS13A-207ENST00000419472 NRXN1Q9ULB1 1477 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 FSBPO95073 299 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 PCSK1P29120 753 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 KRT83P78385 493 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 EFR3AQ14156 821 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 CHRNA2Q15822 529 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 CTXN3Q4LDR2 81 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 SLCO6A1Q86UG4 719 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 GATAD2AQ86YP4 633 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 UTP4Q969X6 686 aaKnown RBP5.65□□□□□ -1.5
VPS13A-207ENST00000419472 EID2BQ96D98 161 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 PLVAPQ9BX97 442 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 PCDHAC1Q9H158 963 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 INCENPQ9NQS7 918 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 POGKQ9P215 609 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 MID2Q9UJV3 735 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 RPS6KA6Q9UK32 745 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 DAPP1Q9UN19 280 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 MED16Q9Y2X0 877 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 MTO1Q9Y2Z2 717 aaKnown RBP5.65□□□□□ -1.5
VPS13A-207ENST00000419472 PIAS3Q9Y6X2 628 aa5.65□□□□□ -1.5
VPS13A-207ENST00000419472 TRIM64A6NGJ6 449 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 TRIM64BA6NI03 449 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 FAM170BA6NMN3 283 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 N4BP3O15049 544 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 ESR1P03372 595 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 ANXA1P04083 346 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 FUT4P22083 530 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 KLRK1P26718 216 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 KCNC1P48547 511 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 ANTXR2P58335 489 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 AP2B1P63010 937 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 TARBP2Q15633 366 aaKnown RBP5.65□□□□□ -1.51
VPS13A-207ENST00000419472 BTBD16Q32M84 506 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 RILPL1Q5EBL4 403 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 DCAF12L1Q5VU92 463 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 FYB2Q5VWT5 728 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 NEIL1Q96FI4 390 aaPredicted RBP5.65□□□□□ -1.51
VPS13A-207ENST00000419472 MYRFLQ96LU7 910 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 TBC1D32Q96NH3 1257 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 ATP13A1Q9HD20 1204 aa5.65□□□□□ -1.51
VPS13A-207ENST00000419472 RUVBL1Q9Y265 456 aaKnown RBP5.65□□□□□ -1.51
VPS13A-207ENST00000419472 FAM135BQ49AJ0 1406 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 A0A0A6YYJ9 748 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 H0Y3Z8 333 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 H3BNC9 293 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 IGF2BP3O00425 579 aaKnown RBP eCLIP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 NRG2O14511 850 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SBK3P0C264 359 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 PTGS1P23219 599 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 CTCFP49711 727 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SNX16P57768 344 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SESN2P58004 480 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ARF3P61204 181 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ARF1P84077 181 aaKnown RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 TDGQ13569 410 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 VWA3BQ502W6 1294 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 DNAJC21Q5F1R6 531 aaKnown RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 CD276Q5ZPR3 534 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ATG16L1Q676U5 607 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 MFSD6Q6ZSS7 791 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 KIAA0408Q6ZU52 694 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 G6PC3Q9BUM1 346 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 WDCPQ9H6R7 721 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ZC3H7BQ9UGR2 993 aaKnown RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ZMYND8Q9ULU4 1186 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 NUB1Q9Y5A7 615 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 KIF7Q2M1P5 1343 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 KIAA1210Q9ULL0 1709 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 H7C0S8 307 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 PRAMEF4O60810 478 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 RASSF9O75901 435 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 TK1P04183 234 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 CKBP12277 381 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ELNP15502 786 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 FAHP16930 419 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 GGT5P36269 586 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 BCAT1P54687 386 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 MVKQ03426 396 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 RASA2Q15283 850 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 TBCEQ15813 527 aaPredicted RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 NFRKBQ6P4R8 1299 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 ZNF449Q6P9G9 518 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 OGFOD3Q6PK18 319 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 NGEFQ8N5V2 710 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SLC15A4Q8N697 577 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 VMP1Q96GC9 406 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 HIST1H2AHQ96KK5 128 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 JAKMIP1Q96N16 626 aaKnown RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 HIST1H2AJQ99878 128 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SEPT11Q9NVA2 429 aaKnown RBP5.64□□□□□ -1.51
VPS13A-207ENST00000419472 USP21Q9UK80 565 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 HSF4Q9ULV5 492 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 USP47Q96K76 1375 aa5.64□□□□□ -1.51
VPS13A-207ENST00000419472 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms