RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 PDIA3P30101 505 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 SRP54P61011 504 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 CLEC16AQ2KHT3 1053 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 MTHFSDQ2M296 383 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 BTBD8Q5XKL5 378 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP1A1P05023 1023 aaKnown RBP13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 NPR3P17342 541 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 LSP1P33241 339 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 BTDP43251 543 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ZMYND11Q15326 602 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 MZT2AQ6P582 158 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 CDK20Q8IZL9 346 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 C1orf54Q8WWF1 131 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 TM9SF1O15321 606 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 ENOSF1Q7L5Y1 443 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 NLRP10Q86W26 655 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 NOD2Q9HC29 1040 aa13.85□□□□□ -0.19
CCDC88A-204ENST00000413716 LGALS16A8MUM7 142 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 TAF13Q15543 124 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF790Q6PG37 636 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 MOV10L1Q9BXT6 1211 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 PRODHO43272 600 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 AHCYL1O43865 530 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 SMNDC1O75940 238 aaKnown RBP eCLIP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 ZCCHC18P0CG32 403 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 GRK4P32298 578 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 KYAT1Q16773 422 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 SLC13A5Q86YT5 568 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 CCDC33Q8N5R6 958 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 KCTD14Q9BQ13 255 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 SERPINB5P36952 375 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 MAPK6Q16659 721 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 AGBL2Q5U5Z8 902 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 BABAM1Q9NWV8 329 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 ARL6IP4Q66PJ3 421 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM172AQ8WUF8 416 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 DDX47Q9H0S4 455 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 FBXO28Q9NVF7 368 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 RAPGEF3O95398 923 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM200BP0CF97 657 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 SCUBE1Q8IWY4 988 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 RORBQ92753 470 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 COMMD8Q9NX08 183 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 WWOXQ9NZC7 414 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 PADI4Q9UM07 663 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 GRIK1P39086 918 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 RBM15Q96T37 977 aaKnown RBP eCLIP13.84□□□□□ -0.192e-12■□□□□ 9
CCDC88A-204ENST00000413716 CHID1Q9BWS9 393 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 COPS7BQ9H9Q2 264 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 KLHL11Q9NVR0 708 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 MGRN1O60291 552 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP9AO75110 1047 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 MZF1P28698 734 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 PGS1Q32NB8 556 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 RC3H1Q5TC82 1133 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 IQCF2Q8IXL9 164 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 XXYLT1Q8NBI6 393 aa13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 RNPC3Q96LT9 517 aaKnown RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM49AQ9H0Q0 323 aaPredicted RBP13.84□□□□□ -0.19
CCDC88A-204ENST00000413716 FTLP02792 175 aaPredicted RBP13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 TSPAN19P0C672 248 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 GCLCP48506 637 aaPredicted RBP13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 RAD23AP54725 363 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 PEX3P56589 373 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF211Q13398 564 aaPredicted RBP13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 SYDE2Q5VT97 1194 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 EID3Q8N140 333 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF614Q8N883 585 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 MCPH1Q8NEM0 835 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 C11orf70Q9BRQ4 267 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 BDH2Q9BUT1 245 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 STN1Q9H668 368 aaKnown RBP13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 EMC3Q9P0I2 261 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 ZHX2Q9Y6X8 837 aa13.83□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF879B4DU55 563 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 SOAT2O75908 522 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 LCP1P13796 627 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 SCNN1DP51172 638 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 CHI3L2Q15782 390 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 LONRF1Q17RB8 773 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 PID1Q7Z2X4 250 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 KIAA0825Q8IV33 1275 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 SLC40A1Q9NP59 571 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 POLR3AO14802 1390 aaPredicted RBP13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 SMIM22K7EJ46 135 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 HOXB7P09629 217 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC17Q96LX7 622 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 VPS33BQ9H267 617 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 MYL3P08590 195 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 ADORA2BP29275 332 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 GPC1P35052 558 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 C3orf20Q8ND61 904 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 CCDC126Q96EE4 140 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 PHF20L1A8MW92 1017 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 TNFAIP8O95379 198 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 CYP2D6P10635 497 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 SCP2P22307 547 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 OCLNQ16625 522 aa13.83□□□□□ -0.2
CCDC88A-204ENST00000413716 PNMA3Q9UL41 463 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms