RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 STAT1P42224 750 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 NOP14P78316 857 aaKnown RBP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 PLCB3Q01970 1234 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 APBA1Q02410 837 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 FAM171A1Q5VUB5 890 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 FUT10Q6P4F1 479 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 TAS1R1Q7RTX1 841 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 DDX53Q86TM3 631 aaKnown RBP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 SUSD3Q96L08 255 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 SAMD11Q96NU1 681 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 NT5C1BQ96P26 610 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 MMS19Q96T76 1030 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIMS1-204ENST00000409441 EPC1Q9H2F5 836 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 CERS4Q9HA82 394 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 POLIQ9UNA4 740 aa14.3□□□□□ -0.12
LIMS1-204ENST00000409441 SF3B1O75533 1304 aaKnown RBP eCLIP14.29□□□□□ -0.128e-6■■■■■ 107
LIMS1-204ENST00000409441 A0A087X0T9 212 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 C5orf67F2Z3F1 127 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 M0QZQ0 153 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 HUS1O60921 280 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 EFEMP2O95967 443 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 FAM228BP0C875 321 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 P4HA1P13674 534 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 TNNC1P63316 161 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 ELAVL2Q12926 359 aaKnown RBP14.29□□□□□ -0.12
LIMS1-204ENST00000409441 SOWAHAQ2M3V2 549 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 PHLDB3Q6NSJ2 640 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 WDR93Q6P2C0 686 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 VN1R3Q9BXE9 311 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 STK33Q9BYT3 514 aa14.29□□□□□ -0.12
LIMS1-204ENST00000409441 ALG13Q9NP73 1137 aaKnown RBP14.29□□□□□ -0.12
LIMS1-204ENST00000409441 LAMA2P24043 3122 aaKnown RBP14.29□□□□□ -0.12
LIMS1-204ENST00000409441 TARSL2A2RTX5 802 aaKnown RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 CCDC172P0C7W6 258 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 PTK2Q05397 1052 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 IFI16Q16666 785 aaKnown RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 ZNF571Q7Z3V5 609 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 CEP57Q86XR8 500 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 NOA1Q8NC60 698 aaKnown RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 APPL2Q8NEU8 664 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 SPDYE1Q8NFV5 336 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 SPPL3Q8TCT6 385 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 ARNTL2Q8WYA1 636 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 RUBCNQ92622 972 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 FAXDC2Q96IV6 333 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 C11orf84Q9BUA3 381 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 NIF3L1Q9GZT8 377 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 UBE2TQ9NPD8 197 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 RNF14Q9UBS8 474 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 INTUQ9ULD6 942 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 NENFQ9UMX5 172 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 PCDHB8Q9UN66 801 aa14.28□□□□□ -0.12
LIMS1-204ENST00000409441 TIMM13Q9Y5L4 95 aaPredicted RBP14.28□□□□□ -0.12
LIMS1-204ENST00000409441 SRGAP2O75044 1071 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 WEE2P0C1S8 567 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 ODC1P11926 461 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 FGFR3P22607 806 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 SOX5P35711 763 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 ASPAP45381 313 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 CDH8P55286 799 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 ARID5AQ03989 594 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 USP41Q3LFD5 358 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 WSCD1Q658N2 575 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 GJB7Q6PEY0 223 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 DPH6Q7L8W6 267 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 LIMS2Q7Z4I7 341 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 ARHGEF19Q8IW93 802 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 RNF168Q8IYW5 571 aaPredicted RBP14.27□□□□□ -0.12
LIMS1-204ENST00000409441 VPS52Q8N1B4 723 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 PPM1KQ8N3J5 372 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 TOP6BLQ8N6T0 577 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 FBXO22Q8NEZ5 403 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 B3GALT6Q96L58 329 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 OSBPL9Q96SU4 736 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 PNKPQ96T60 521 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 APEX2Q9UBZ4 518 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 STK39Q9UEW8 545 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 ADAMTS1Q9UHI8 967 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 PCDHGC5Q9Y5F6 944 aa14.27□□□□□ -0.12
LIMS1-204ENST00000409441 SCN1AP35498 2009 aa14.27□□□□□ -0.13
LIMS1-204ENST00000409441 ARHGEF37A1IGU5 675 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 H3BNC9 293 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 SYN3O14994 580 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 SOD2P04179 222 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 FAM163BP0C2L3 166 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 ATXN8OSP0DMR3 200 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 TKTP29401 623 aaKnown RBP14.26□□□□□ -0.13
LIMS1-204ENST00000409441 GABPB1Q06547 395 aaPredicted RBP14.26□□□□□ -0.13
LIMS1-204ENST00000409441 GPM6BQ13491 265 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 CUL2Q13617 745 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 LONRF2Q1L5Z9 754 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 KIAA1841Q6NSI8 718 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 CCDC70Q6NSX1 233 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 SCARA5Q6ZMJ2 495 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 METTL23Q86XA0 190 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 CAPZA3Q96KX2 299 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 TTPALQ9BTX7 342 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 BCO2Q9BYV7 579 aa14.26□□□□□ -0.13
LIMS1-204ENST00000409441 SDCBP2Q9H190 292 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms