RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CCDC28BQ9BUN5 200 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PPCSQ9HAB8 311 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CNGB3Q9NQW8 809 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PPP1R1BQ9UD71 204 aaPredicted RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CIDEBQ9UHD4 219 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 COMMD10Q9Y6G5 202 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CHD1O14646 1710 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DLG5Q8TDM6 1919 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 USP17L10C9JJH3 530 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 BANF1O75531 89 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 PAX3P23760 479 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 NFKBIAP25963 317 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 CASP5P51878 434 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 NR1H2P55055 460 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TCP10Q12799 353 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 UBAP2LQ14157 1087 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SUSD4Q5VX71 490 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 JADE1Q6IE81 842 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 DENND5BQ6ZUT9 1274 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ASRGL1Q7L266 308 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 AFAP1L2Q8N4X5 818 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ELMO3Q96BJ8 720 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 ADAM7Q9H2U9 754 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 TIMMDC1Q9NPL8 285 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SEPT10Q9P0V9 454 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 SLC17A7Q9P2U7 560 aa9.73□□□□□ -0.85
COL28A1-201ENST00000399429 RSL24D1Q9UHA3 163 aaKnown RBP9.73□□□□□ -0.85
COL28A1-201ENST00000399429 IGSF9BQ9UPX0 1349 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 E9PBE3 544 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 hCG_1984214I3L0E3 225 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 MAGEB3O15480 346 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 KLHL41O60662 606 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 RFX1P22670 979 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 PSMA2P25787 234 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 GARSP41250 739 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ECE1P42892 770 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 KCNA1Q09470 495 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 BMPR2Q13873 1038 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 NCCRP1Q6ZVX7 275 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SLC47A2Q86VL8 602 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SIX6OS1Q8N1H7 587 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ZNF713Q8N859 430 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ENDOVQ8N8Q3 282 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 TSPAN14Q8NG11 270 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 FGFBP2Q9BYJ0 223 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ADNPQ9H2P0 1102 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 PHF24Q9UPV7 400 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SATB2Q9UPW6 733 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 DMTF1Q9Y222 760 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 PCDHA3Q9Y5H8 950 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 AP4B1Q9Y6B7 739 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 IQCJ-SCHIP1C9J366 451 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 RIMBP2O15034 1052 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ADAMTS3O15072 1205 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ZBED1O96006 694 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 KRT19P08727 400 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 C6orf222P0C671 652 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 CDH3P22223 829 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 TYK2P29597 1187 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 MSX2P35548 267 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 VCPP55072 806 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 PEX3P56589 373 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 OR52E8Q6IFG1 317 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SPOPLQ6IQ16 392 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 TMC5Q6UXY8 1006 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 GPR101Q96P66 508 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 FAM96AQ9H5X1 160 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ZC3H7BQ9UGR2 993 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 WDR37Q9Y2I8 494 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 AP4S1Q9Y587 144 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ZMYM2Q9UBW7 1377 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ADGRA3Q8IWK6 1321 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 PRR5-ARHGAP8B1AHC4 643 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 DAB1O75553 588 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 KRT8P05787 483 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 APRTP07741 180 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 HSPA8P11142 646 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ETS1P14921 441 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 CASP2P42575 452 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 MAGEA10P43363 369 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 NEK2P51955 445 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 ARHGAP8P85298 464 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 FUT2Q10981 343 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 NFX1Q12986 1120 aaKnown RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 TBCCQ15814 346 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 CATSPER3Q86XQ3 398 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 CLEC10AQ8IUN9 316 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 RMND5BQ96G75 393 aaPredicted RBP9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SEMA6AQ9H2E6 1030 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 SLC9A2Q9UBY0 812 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 TTLL3Q9Y4R7 772 aa9.72□□□□□ -0.85
COL28A1-201ENST00000399429 GPR75-ASB3A0A0A6YYF3 556 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SMAPO00193 183 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 SORBS3O60504 671 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 MED24O75448 989 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 HSPA13P48723 471 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 COG2Q14746 738 aa9.71□□□□□ -0.85
COL28A1-201ENST00000399429 MAPK6Q16659 721 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms