RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 CPB2Q96IY4 423 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 MAGEB18Q96M61 343 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 PAFAH2Q99487 392 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 NPHS2Q9NP85 383 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 TJP2Q9UDY2 1190 aa5.18□□□□□ -1.58
SMAD4-202ENST00000398417 ADGRA3Q8IWK6 1321 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 MCF2LO15068 1137 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SKAP2O75563 359 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 STAMBPO95630 424 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ZBED1O96006 694 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SSTR1P30872 391 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RFC5P40937 340 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 WNT7BP56706 349 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TXNRD3NBQ6F5E7 133 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 LRRC6Q86X45 466 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 MAP7D3Q8IWC1 876 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 NME8Q8N427 588 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 AGAP11Q8TF27 550 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 NLRP7Q8WX94 980 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM149B1Q96BN6 582 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CENPTQ96BT3 561 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TMEM237Q96Q45 408 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PPP1R12CQ9BZL4 782 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM49AQ9H0Q0 323 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 XPO7Q9UIA9 1087 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CFAP73A6NFT4 308 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ARHGAP42A6NI28 874 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 LPXNO60711 386 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CBX6O95503 412 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ITGB3P05106 788 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CXCL8P10145 99 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TXNP10599 105 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ADRA1DP25100 572 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RASSF2P50749 326 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAAP100Q0VG06 881 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FSTL1Q12841 308 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TRIM72Q6ZMU5 477 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CATSPERGQ6ZRH7 1159 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CCDC110Q8TBZ0 833 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CCHCR1Q8TD31 782 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SPATA17Q96L03 361 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SPATA33Q96N06 139 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 YIPF3Q9GZM5 350 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TMEM191CA6NGB0 347 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ZC3H11AO75152 810 aaKnown RBP eCLIP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 NPM3O75607 178 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 AP3M2P53677 418 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GDF10P55107 478 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PLCB4Q15147 1175 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 NLRP9Q7RTR0 991 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CCNYQ8ND76 341 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RFWD2Q8NHY2 731 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 STMN2Q93045 179 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CNTNAP1P78357 1384 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ZNF541Q9H0D2 1346 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 IQANK1A0A1B0GTG1 560 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM47DPA6NHR8 397 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PSTPIP1O43586 416 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 LCP1P13796 627 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 ALDH5A1P51649 535 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SIX1Q15475 284 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SURF1Q15526 300 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TEX13BQ9BXU2 312 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TRIM55Q9BYV6 548 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CISHQ9NSE2 258 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TXLNGQ9NUQ3 528 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM49BQ9NUQ9 324 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.17□□□□□ -1.581e-32■■■■■ 34.6
SMAD4-202ENST00000398417 PSMC3IPQ9P2W1 217 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GMEB2Q9UKD1 530 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 USH1CQ9Y6N9 552 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 DYTNA2CJ06 578 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TTLL13PA6NNM8 815 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GPD1P21695 349 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RPA3P35244 121 aaPredicted RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GAD2Q05329 585 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PTK7Q13308 1070 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 MUM1Q2TAK8 710 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GOLGA7BQ2TAP0 167 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 LGSNQ5TDP6 509 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 BRSK2Q8IWQ3 736 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PPIL6Q8IXY8 311 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 PDIK1LQ8N165 341 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 TTC13Q8NBP0 860 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RNF34Q969K3 372 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 DCPSQ96C86 337 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 SLITRK1Q96PX8 696 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FAM111AQ96PZ2 611 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 LPIN3Q9BQK8 851 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 I3L4J1 428 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 OGTO15294 1046 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 CDH16O75309 829 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 FDX1P10109 184 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 OSBPP22059 807 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 NRLP54845 237 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 BACE1P56817 501 aa5.17□□□□□ -1.58
SMAD4-202ENST00000398417 GEMIN4P57678 1058 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 RPL7AP62424 266 aaKnown RBP5.17□□□□□ -1.58
SMAD4-202ENST00000398417 EFCAB12Q6NXP0 572 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms