RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 C1orf167Q5SNV9 1468 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 A0A0G2JLW4 131 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TRPC5OSA6NMA1 111 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 F9P00740 461 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SLC11A2P49281 568 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TP53BP2Q13625 1128 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PDK2Q15119 407 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 HIST2H2ACQ16777 129 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 E4F1Q66K89 784 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 HIST2H2AA3Q6FI13 130 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ZNF473Q8WTR7 871 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 FAR2Q96K12 515 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SEPT5Q99719 369 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 STAU2Q9NUL3 570 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ZMYM2Q9UBW7 1377 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PTPRMP28827 1452 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CNTNAP4Q9C0A0 1308 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 H7C4K7 107 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 HLA-DRAP01903 254 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 MAGEA4P43358 317 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 RGS7P49802 495 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 FMR1Q06787 632 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TMEM132BQ14DG7 1078 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PHKG1Q16816 387 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ZC2HC1CQ53FD0 456 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 MRNIPQ6NTE8 343 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TRIM65Q6PJ69 517 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SLC16A10Q8TF71 515 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 GIMAP4Q9NUV9 329 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SCN3BQ9NY72 215 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP5.68□□□□□ -1.59e-8■■■□□ 18.8
VPS13C-204ENST00000395898 C17orf102A2RUQ5 167 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CST8O60676 142 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 DEAF1O75398 565 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ITGB3P05106 788 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PRLRP16471 622 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ARL4DP49703 201 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 FXR1P51114 621 aaKnown RBP eCLIP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CACNB2Q08289 660 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 STX5Q13190 355 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CUL2Q13617 745 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TPCN2Q8NHX9 752 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 APBB2Q92870 758 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CDK5RAP1Q96SZ6 601 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 MROH8Q9H579 483 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 MANSC1Q9H8J5 431 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 COPG1Q9Y678 874 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 FOXN1O15353 648 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SOAT2O75908 522 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SERPIND1P05546 499 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 RASA1P20936 1047 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PCSK7Q16549 785 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PREPLQ4J6C6 727 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PLAGL2Q9UPG8 496 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 USP27XA6NNY8 438 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 NCAM2O15394 837 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ALDH1A2O94788 518 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 LRG1P02750 347 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 WEE2P0C1S8 567 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TGFB3P10600 412 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 COMTP21964 271 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ATICP31939 592 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 KPNA1P52294 538 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 PLA2G4FQ68DD2 849 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 LMBRD2Q68DH5 695 aaPredicted RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 HORMAD1Q86X24 394 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 LRRC6Q86X45 466 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 THAP11Q96EK4 314 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SEC16BQ96JE7 1060 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ECSITQ9BQ95 431 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TSR3Q9UJK0 312 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 DBR1Q9UK59 544 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SYNDIG1LA6NDD5 238 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TIMM44O43615 452 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CYP2C9P11712 490 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 HSPA13P48723 471 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 KCNK10P57789 538 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 SLC29A2Q14542 456 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 KIZQ2M2Z5 673 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 GOLGA7BQ2TAP0 167 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ICE2Q659A1 982 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ZNF507Q8TCN5 953 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 TMEM169Q96HH4 297 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 DPP3Q9NY33 737 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 UTP6Q9NYH9 597 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 GGA3Q9NZ52 723 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 MYH7P12883 1935 aa5.68□□□□□ -1.5
VPS13C-204ENST00000395898 ARHGEF28Q8N1W1 1705 aaKnown RBP5.68□□□□□ -1.5
VPS13C-204ENST00000395898 CCL15-CCL14A0A0B4J2E2 113 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 SLC9A1P19634 815 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 CCND1P24385 295 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 TCF7P36402 384 aaPredicted RBP5.67□□□□□ -1.5
VPS13C-204ENST00000395898 GTF2A2P52657 109 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 RPS6P62753 249 aaKnown RBP5.67□□□□□ -1.5
VPS13C-204ENST00000395898 CCL15Q16663 113 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 CLEC16AQ2KHT3 1053 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 UNC45BQ8IWX7 931 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 ARMC2Q8NEN0 867 aa5.67□□□□□ -1.5
VPS13C-204ENST00000395898 DIS3LQ8TF46 1054 aaKnown RBP5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms