RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 REEP2Q9BRK0 252 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 MKNK1Q9BUB5 465 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 VCX3BQ9H321 246 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 TUFT1Q9NNX1 390 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 VCX3AQ9NNX9 186 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 SAR1AQ9NR31 198 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 GCNT4Q9P109 453 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 DNM3Q9UQ16 869 aa11.75□□□□□ -0.53
CUX1-204ENST00000393824 ZNF865P0CJ78 1059 aaPredicted RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 RFX1P22670 979 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 YWHABP31946 246 aaKnown RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 HOXD13P35453 343 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 TCF7P36402 384 aaPredicted RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 SP3Q02447 781 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ZRSR2Q15696 482 aaKnown RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 OLFML2BQ68BL8 750 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 C11orf63Q6NUN7 778 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 RINT1Q6NUQ1 792 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 AADACL2Q6P093 401 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 CCDC25Q86WR0 208 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 TRPV1Q8NER1 839 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 SLCO2A1Q92959 643 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ARHGEF26Q96DR7 871 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 NR1H4Q96RI1 486 aaPredicted RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 NDNQ99608 321 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 GPR20Q99678 358 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ATXN10Q9UBB4 475 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 PHTF1Q9UMS5 762 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 CDH16O75309 829 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ATG7O95352 703 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ASMTLO95671 621 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 SUPT20HL2P0C7V6 817 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 TGFB3P10600 412 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ELNP15502 786 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 GAP43P17677 238 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 RARRES1P49788 294 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 SLC18A1P54219 525 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 WDR4P57081 412 aaKnown RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 CCDC6Q16204 474 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 FAM47EQ6ZV65 393 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 CCDC105Q8IYK2 499 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 CYP4X1Q8N118 509 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 C12orf50Q8NA57 414 aaPredicted RBP11.74□□□□□ -0.53
CUX1-204ENST00000393824 NRG4Q8WWG1 115 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 SPATA33Q96N06 139 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 GBP5Q96PP8 586 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ZSWIM1Q9BR11 485 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 COG5Q9UP83 839 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 ZNF236Q9UL36 1845 aa11.74□□□□□ -0.53
CUX1-204ENST00000393824 IGKV6D-21A0A0A0MT36 114 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 EIF3DO15371 548 aaKnown RBP eCLIP11.73□□□□□ -0.53
CUX1-204ENST00000393824 ITIH2P19823 946 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 ABCB4P21439 1286 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 MUTP22033 750 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 CASP5P51878 434 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 JAK3P52333 1124 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 PRKCEQ02156 737 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 SLC34A1Q06495 639 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 TTLL4Q14679 1199 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 SLC45A4Q5BKX6 768 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 DCAF17Q5H9S7 520 aaPredicted RBP11.73□□□□□ -0.53
CUX1-204ENST00000393824 C1orf186Q6ZWK4 172 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 SFR1Q86XK3 245 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 CCNJLQ8IV13 435 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 DAW1Q8N136 415 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 HAPLN3Q96S86 360 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 APBA2Q99767 749 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 PPP1R12CQ9BZL4 782 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 IKZF4Q9H2S9 585 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 GPRC5CQ9NQ84 441 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 OLFML3Q9NRN5 406 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 DDX43Q9NXZ2 648 aaKnown RBP11.73□□□□□ -0.53
CUX1-204ENST00000393824 EURLQ9NYK6 297 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 MTUS1Q9ULD2 1270 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 TMCO1Q9UM00 188 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 NAALADL1Q9UQQ1 740 aa11.73□□□□□ -0.53
CUX1-204ENST00000393824 RBM47A0AV96 593 aaKnown RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 FAM47DPA6NHR8 397 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 FOXO6A8MYZ6 492 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 CBX6O95503 412 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SFNP31947 248 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 PSMC2P35998 433 aaKnown RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 RGS2P41220 211 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 FCGRTP55899 365 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 PSMC5P62195 406 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 AP1B1Q10567 949 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 SIX1Q15475 284 aaPredicted RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 TCERG1LQ5VWI1 586 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 ZNF449Q6P9G9 518 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 LRRC74BQ6ZQY2 392 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 TSHZ1Q6ZSZ6 1077 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 ZNF296Q8WUU4 475 aaPredicted RBP11.72□□□□□ -0.53
CUX1-204ENST00000393824 AFG1LQ8WV93 481 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 C10orf82Q8WW14 230 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 KRT35Q92764 455 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 THAP2Q9H0W7 228 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 ABHD16BQ9H3Z7 469 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 LRRC19Q9H756 370 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 VTA1Q9NP79 307 aa11.72□□□□□ -0.53
CUX1-204ENST00000393824 LARSQ9P2J5 1176 aaKnown RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms