RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NCK2O43639 380 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 IRAK1P51617 712 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 UAP1Q16222 522 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 PKN2Q16513 984 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KCTD19Q17RG1 926 aaPredicted RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ZNF280DQ6N043 979 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TSHZ1Q6ZSZ6 1077 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 VPS52Q8N1B4 723 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SLC7A14Q8TBB6 771 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 HVCN1Q96D96 273 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 LPIN3Q9BQK8 851 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 NUP85Q9BW27 656 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KANSL3Q9P2N6 904 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TNS1Q9HBL0 1735 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KIAA0391O15091 583 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 KRT3P12035 628 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SCP2P22307 547 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ARHGAP25P42331 645 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 RAB27AP51159 221 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 DDR2Q16832 855 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SLC39A5Q6ZMH5 540 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 SCUBE3Q8IX30 993 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 DCP1BQ8IZD4 617 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 TTC8Q8TAM2 541 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 MCEEQ96PE7 176 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 AGPAT1Q99943 283 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 LIMA1Q9UHB6 759 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 RASAL2Q9UJF2 1139 aa10.87□□□□□ -0.67
COL6A3-205ENST00000392004 BZW2Q9Y6E2 419 aaKnown RBP10.87□□□□□ -0.67
COL6A3-205ENST00000392004 ARL5CA6NH57 179 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 LYPLA2O95372 231 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PBX1P40424 430 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 ARL1P40616 181 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PTK7Q13308 1070 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 SEPT7Q16181 437 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 TDRD10Q5VZ19 366 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PPP2R2DQ66LE6 453 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PRSS55Q6UWB4 352 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 TRIM59Q8IWR1 403 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 GIMAP7Q8NHV1 300 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 NSMCE1Q8WV22 266 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 MKNK1Q9BUB5 465 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 SLC12A6Q9UHW9 1150 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 GNEQ9Y223 722 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 CDY1Q9Y6F8 540 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 DOCK3Q8IZD9 2030 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 ATP1A1P05023 1023 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 MAPK7Q13164 816 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PPIGQ13427 754 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 ELMSAN1Q6PJG2 1045 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 WDR49Q8IV35 697 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 YAF2Q8IY57 180 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 GSPT2Q8IYD1 628 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 FBXO32Q969P5 355 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 SLITRK1Q96PX8 696 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 MED15Q96RN5 788 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 STK33Q9BYT3 514 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 ATXN3LQ9H3M9 355 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 CAPN7Q9Y6W3 813 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 A0A0B4J269 797 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 NDUFV1P49821 464 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 AP3M2P53677 418 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 AMPD2Q01433 879 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 EFEMP1Q12805 493 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PDXDC1Q6P996 788 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 CCNI2Q6ZMN8 369 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 CCDC97Q96F63 343 aaPredicted RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 MBOAT7Q96N66 472 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 TSGA10Q9BZW7 698 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 DPH5Q9H2P9 285 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 PPANQ9NQ55 473 aaKnown RBP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.86□□□□□ -0.67
COL6A3-205ENST00000392004 ARHGAP28Q9P2N2 729 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 STRIP2Q9ULQ0 834 aa10.86□□□□□ -0.67
COL6A3-205ENST00000392004 KAT6AQ92794 2004 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 ATP2C2O75185 946 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 DUSP4Q13115 394 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 KCNT1Q5JUK3 1230 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 RNF187Q5TA31 235 aaPredicted RBP10.85□□□□□ -0.67
COL6A3-205ENST00000392004 CORO1BQ9BR76 489 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 AP1M1Q9BXS5 423 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 FTHL17Q9BXU8 183 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 MRPL47Q9HD33 250 aaKnown RBP10.85□□□□□ -0.67
COL6A3-205ENST00000392004 MRPL17Q9NRX2 175 aaKnown RBP10.85□□□□□ -0.67
COL6A3-205ENST00000392004 DNAJC17Q9NVM6 304 aaKnown RBP10.85□□□□□ -0.67
COL6A3-205ENST00000392004 TRAF3IP3Q9Y228 551 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 EPHB6O15197 1021 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 ARL4AP40617 200 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 PLD1Q13393 1074 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.85□□□□□ -0.67
COL6A3-205ENST00000392004 CCDC89Q8N998 374 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 ASB7Q9H672 318 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 TMEM134Q9H6X4 195 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 HCSTQ9UBK5 93 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 F8VP50 259 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 PPEF2O14830 753 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 ADSSP30520 456 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 LPIN1Q14693 890 aa10.85□□□□□ -0.67
COL6A3-205ENST00000392004 SLC10A6Q3KNW5 377 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms