RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 CHRNB2P17787 502 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 GNA15P30679 374 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 BPIFB4P59827 614 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 YWHAEP62258 255 aaKnown RBP13.19□□□□□ -0.3
CIITA-202ENST00000381835 SKOR1P84550 965 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 NNTQ13423 1086 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 SLC30A5Q8TAD4 765 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 PACSIN1Q9BY11 444 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 UBN1Q9NPG3 1134 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 LUC7LQ9NQ29 371 aaKnown RBP13.19□□□□□ -0.3
CIITA-202ENST00000381835 PRDM5Q9NQX1 630 aaPredicted RBP13.19□□□□□ -0.3
CIITA-202ENST00000381835 RNF14Q9UBS8 474 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 CNTN6Q9UQ52 1028 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 CASTOR2A6NHX0 329 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 ENPP3O14638 875 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 EOMESO95936 686 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 SSTR3P32745 418 aaPredicted RBP13.19□□□□□ -0.3
CIITA-202ENST00000381835 FMO1Q01740 532 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 CDR2Q01850 454 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 ORC1Q13415 861 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 NAB2Q15742 525 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 TCTN1Q2MV58 587 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 CFAP58Q5T655 872 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 KCTD16Q68DU8 428 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 IFT81Q8WYA0 676 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 DDX1Q92499 740 aaKnown RBP13.19□□□□□ -0.3
CIITA-202ENST00000381835 ZNF560Q96MR9 790 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 EPB41L5Q9HCM4 733 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 TAS2R14Q9NYV8 317 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 NFU1Q9UMS0 254 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 TTC3P53804 2025 aa13.19□□□□□ -0.3
CIITA-202ENST00000381835 SPTLC1O15269 473 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 THAP12O43422 761 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 HEXIM1O94992 359 aaKnown RBP13.18□□□□□ -0.3
CIITA-202ENST00000381835 KRT14P02533 472 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 GLI1P08151 1106 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 FGFR1P11362 822 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 IGFBP6P24592 240 aaPredicted RBP13.18□□□□□ -0.3
CIITA-202ENST00000381835 LRPAP1P30533 357 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 CARSP49589 748 aaKnown RBP13.18□□□□□ -0.3
CIITA-202ENST00000381835 TAF6P49848 677 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 DNA2P51530 1060 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 CLCNKBP51801 687 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 FAM189BP81408 668 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 GUCY2DQ02846 1103 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 PDCLQ13371 301 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 APBB2Q92870 758 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 FAXDC2Q96IV6 333 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 PCDHB18PQ96TA0 734 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 CYP3A43Q9HB55 503 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 PCDH10Q9P2E7 1040 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 KPNA7A9QM74 516 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 NDUFAB1O14561 156 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 EN2P19622 333 aaPredicted RBP13.18□□□□□ -0.3
CIITA-202ENST00000381835 PNPLA4P41247 253 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 ATP1A2P50993 1020 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 ZNF132P52740 706 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 LILRA4P59901 499 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 GLB1LQ6UWU2 654 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 SH2D3CQ8N5H7 860 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 PAAF1Q9BRP4 392 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 GDF3Q9NR23 364 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 HMGXB4Q9UGU5 601 aa13.18□□□□□ -0.3
CIITA-202ENST00000381835 PALMO75781 387 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 PARNO95453 639 aaKnown RBP13.17□□□□□ -0.3
CIITA-202ENST00000381835 CXCL10P02778 98 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 SV2CQ496J9 727 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 CLLU1OSQ5K130 101 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 C10orf76Q5T2E6 689 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 TWNKQ96RR1 684 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 NENFQ9UMX5 172 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 PCDHB7Q9Y5E2 793 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 MICAL3Q7RTP6 2002 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 ESYT3A0FGR9 886 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 PODXLO00592 558 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 CILPO75339 1184 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 CFHP08603 1231 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 H2AFZP0C0S5 128 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 FAM153BP0C7A2 387 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 CD19P15391 556 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 ABCB4P21439 1286 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 GRIK3Q13003 919 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 FAM153CQ494X1 144 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 MMS22LQ6ZRQ5 1243 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 H2AFVQ71UI9 128 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 B4GALNT4Q76KP1 1039 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 ZNF677Q86XU0 584 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 PASD1Q8IV76 773 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 ZNF606Q8WXB4 792 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 MRPL45Q9BRJ2 306 aaKnown RBP13.17□□□□□ -0.3
CIITA-202ENST00000381835 TMEM161AQ9NX61 479 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 FAM153AQ9UHL3 310 aa13.17□□□□□ -0.3
CIITA-202ENST00000381835 ZSCAN5CA6NGD5 496 aaPredicted RBP13.16□□□□□ -0.3
CIITA-202ENST00000381835 FTCDO95954 541 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 ITGB8P26012 769 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 NDST1P52848 882 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 RAD23BP54727 409 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 GALCP54803 685 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 SOWAHAQ2M3V2 549 aa13.16□□□□□ -0.3
CIITA-202ENST00000381835 IQCKQ8N0W5 287 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms