RNA–Protein interactions for RNA: ENST00000374199.8

PRPF4-202, Transcript of pre-mRNA processing factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PRPF4, Length 3,212 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF4-202ENST00000374199 MRPL10Q7Z7H8 261 aaKnown RBP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 EXOC4Q96A65 974 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 SLITRK1Q96PX8 696 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 NXF3Q9H4D5 531 aaKnown RBP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 CHST12Q9NRB3 414 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 HOMER3Q9NSC5 361 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 TUBGCP4Q9UGJ1 667 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 UBQLN1Q9UMX0 589 aaKnown RBP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 AGAP1Q9UPQ3 857 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 SHOX2O60902 331 aaPredicted RBP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 BEX3Q00994 111 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 CCNG2Q16589 344 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 TMEM110Q86TL2 294 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 RELL1Q8IUW5 271 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 RCOR2Q8IZ40 523 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 FAM212AQ96EL1 285 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 KIF12Q96FN5 646 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 GABRQQ9UN88 632 aa13.3□□□□□ -0.28
PRPF4-202ENST00000374199 UTP11Q9Y3A2 253 aaKnown RBP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.3□□□□□ -0.28
PRPF4-202ENST00000374199 SMIM28A0A1B0GU29 152 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 GABBR2O75899 941 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 RECQL4O94761 1208 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 NDST1P52848 882 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 MRPS6P82932 125 aaKnown RBP13.29□□□□□ -0.28
PRPF4-202ENST00000374199 SOWAHAQ2M3V2 549 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 TRIM71Q2Q1W2 868 aaKnown RBP13.29□□□□□ -0.28
PRPF4-202ENST00000374199 C2CD6Q53TS8 623 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 CATSPER4Q7RTX7 472 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 BNIPLQ7Z465 357 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 ARRDC4Q8NCT1 418 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 GSTCDQ8NEC7 633 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 SLC35F5Q8WV83 523 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 KHSRPQ92945 711 aaKnown RBP eCLIP13.29□□□□□ -0.28
PRPF4-202ENST00000374199 GRIN2DO15399 1336 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 PPEF2O14830 753 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 DAPK3O43293 454 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 CD4P01730 458 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 GPS2Q13227 327 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 CCDC137Q6PK04 289 aaKnown RBP13.29□□□□□ -0.28
PRPF4-202ENST00000374199 SCARA5Q6ZMJ2 495 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 ERICH1Q86X53 443 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 ZIM3Q96PE6 472 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 ARHGAP39Q9C0H5 1083 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 PRDM10Q9NQV6 1147 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 DDX56Q9NY93 547 aaKnown RBP13.29□□□□□ -0.28
PRPF4-202ENST00000374199 WHRNQ9P202 907 aa13.29□□□□□ -0.28
PRPF4-202ENST00000374199 GOLGA6BA6NDN3 693 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 ZNF487B1APH4 448 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 PTGESO14684 152 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 NUDT17P0C025 328 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TCF4P15884 667 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 KLRC2P26717 231 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 PCK1P35558 622 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 FLT3P36888 993 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 PNPLA4P41247 253 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 GUCY2FP51841 1108 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 MYO1EQ12965 1108 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TRNP1Q6NT89 227 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 WNT8BQ93098 351 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 PPP1R16BQ96T49 567 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 MTUS1Q9ULD2 1270 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 IPPQ9Y573 584 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TMEM110-MUSTN1A8MSY1 372 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 MYL3P08590 195 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 CDKN2BP42772 138 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 DMTNQ08495 405 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 DSC3Q14574 896 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 DNAJC24Q6P3W2 148 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 BEST2Q8NFU1 509 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 MCEEQ96PE7 176 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TRIM51Q9BSJ1 452 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 NT5C1AQ9BXI3 368 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 NXF1Q9UBU9 619 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TJP2Q9UDY2 1190 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TDRD15B5MCY1 1934 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TMEM88BA6NKF7 163 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 GOLGA8KD6RF30 607 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 GABRDO14764 452 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 CHRNA1P02708 482 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 WARSP23381 471 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 HSD17B3P37058 310 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 RPL21P46778 160 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 SOX4Q06945 474 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 SGO2Q562F6 1265 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TNFAIP8L3Q5GJ75 292 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 GDF6Q6KF10 455 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 OLFML1Q6UWY5 402 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 DPH6Q7L8W6 267 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 CMASQ8NFW8 434 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 C18orf25Q96B23 403 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 RBM41Q96IZ5 413 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 MRPL45Q9BRJ2 306 aaKnown RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TMEM109Q9BVC6 243 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 FRMD8P1Q9BZ68 369 aaPredicted RBP13.28□□□□□ -0.28
PRPF4-202ENST00000374199 CEP83Q9Y592 693 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 TRPV2Q9Y5S1 764 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 SQORQ9Y6N5 450 aa13.28□□□□□ -0.28
PRPF4-202ENST00000374199 SPTLC1O15269 473 aa13.27□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms