RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 CACNB2Q08289 660 aaPredicted RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 STK4Q13043 487 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 MAPK7Q13164 816 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 KCNB1Q14721 858 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 IQCB1Q15051 598 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 ZFYVE27Q5T4F4 411 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 TDRD10Q5VZ19 366 aaKnown RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 UNC13DQ70J99 1090 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 NECAB2Q7Z6G3 386 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 MCATQ8IVS2 390 aaKnown RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 MRPL41Q8IXM3 137 aaKnown RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 DAW1Q8N136 415 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 CNTD1Q8N815 330 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 ZNF513Q8N8E2 541 aaPredicted RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 LRRN4CLQ8ND94 238 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 FAM13CQ8NE31 585 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 AFAP1L1Q8TED9 768 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 SCLYQ96I15 445 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 REEP2Q9BRK0 252 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 LRRC27Q9C0I9 530 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 ZNF302Q9NR11 478 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 PDLIM7Q9NR12 457 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 ANKEF1Q9NU02 776 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 ANO10Q9NW15 660 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 SUCOQ9UBS9 1254 aaKnown RBP3.9□□□□□ -1.78
MCF2-202ENST00000370573 PCDHA2Q9Y5H9 948 aa3.9□□□□□ -1.78
MCF2-202ENST00000370573 TRAV20A0A0B4J274 112 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ARHGEF35A5YM69 484 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 C9IYK1 514 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 NEMP1O14524 444 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 KPNA6O60684 536 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 HIP1RO75146 1068 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ABLIM3O94929 683 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ITGAVP06756 1048 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 EPHX1P07099 455 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 MMP3P08254 477 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 IDEP14735 1019 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 PRCPP42785 496 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 SOX10P56693 466 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 TMPRSS15P98073 1019 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 COASYQ13057 564 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 PLCB4Q15147 1175 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 TARBP2Q15633 366 aaKnown RBP3.9□□□□□ -1.79
MCF2-202ENST00000370573 XKR9Q5GH70 373 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 XKR3Q5GH77 459 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ZNF658Q5TYW1 1059 aaPredicted RBP3.9□□□□□ -1.79
MCF2-202ENST00000370573 MFSD14CQ5VZR4 134 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 SLC6A19Q695T7 634 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 PLPPR4Q7Z2D5 763 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 LUZP1Q86V48 1076 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 DHX40Q8IX18 779 aaKnown RBP3.9□□□□□ -1.79
MCF2-202ENST00000370573 TMEM192Q8IY95 271 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 TRIML1Q8N9V2 468 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 MLKLQ8NB16 471 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 KIAA0895Q8NCT3 520 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 PPTC7Q8NI37 304 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ATP6V0A1Q93050 837 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 UBE2FQ969M7 185 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ERO1AQ96HE7 468 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 CCDC34Q96HJ3 373 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 C16orf70Q9BSU1 422 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 MRPL4Q9BYD3 311 aaKnown RBP3.9□□□□□ -1.79
MCF2-202ENST00000370573 RNPEPQ9H4A4 650 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 SLC39A2Q9NP94 309 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 CRTAC1Q9NQ79 661 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 XPNPEP1Q9NQW7 623 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 PANK4Q9NVE7 773 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 TBC1D7Q9P0N9 293 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 ZNF180Q9UJW8 692 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 INTUQ9ULD6 942 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 FAM184BQ9ULE4 1060 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 SNX11Q9Y5W9 270 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 CAPN6Q9Y6Q1 641 aa3.9□□□□□ -1.79
MCF2-202ENST00000370573 MYH9P35579 1960 aaKnown RBP3.9□□□□□ -1.79
MCF2-202ENST00000370573 BLACEA4D250 179 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 MYADML2A6NDP7 307 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 GOLGA6L3A6NEY3 463 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 NOP56O00567 594 aaKnown RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 NKRFO15226 690 aaKnown RBP eCLIP3.89□□□□□ -1.79
MCF2-202ENST00000370573 AP5Z1O43299 807 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 USO1O60763 962 aaKnown RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 PAPLNO95428 1278 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 TP53P04637 393 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 LGALS2P05162 132 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 POU3F2P20265 443 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 MARK3P27448 753 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 HOXD10P28358 340 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 CCND3P30281 292 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 CASP5P51878 434 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 ZNF131P52739 623 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 MAP2K1Q02750 393 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 TNK2Q07912 1038 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 BRD3Q15059 726 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 HERC4Q5GLZ8 1057 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 MAP3K21Q5TCX8 1036 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 RNF219Q5W0B1 726 aaPredicted RBP3.89□□□□□ -1.79
MCF2-202ENST00000370573 FAM160B1Q5W0V3 765 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 NXNQ6DKJ4 435 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 MAEAQ7L5Y9 396 aa3.89□□□□□ -1.79
MCF2-202ENST00000370573 SFR1Q86XK3 245 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms