RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 A0A087X0T9 212 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 HOXC6P09630 235 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 FAM228BP0C875 321 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 SESN3P58005 492 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 MYL6P60660 151 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 RASSF3Q86WH2 238 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 RIN2Q8WYP3 895 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 DDX27Q96GQ7 796 aaKnown RBP12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TINF2Q9BSI4 451 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TRIM51Q9BSJ1 452 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 RAB6BQ9NRW1 208 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 AIPL1Q9NZN9 384 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 TRIM10Q9UDY6 481 aa12.12□□□□□ -0.47
SYNE1-204ENST00000367248 EML1O00423 815 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ZPBP2Q6X784 338 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 C7orf61Q8IZ16 206 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 FAM96AQ9H5X1 160 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 CYP3A43Q9HB55 503 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 DDIT4Q9NX09 232 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 CYP39A1Q9NYL5 469 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 TRAF3IP3Q9Y228 551 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 GLTPD2A6NH11 291 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 FKBP1BP68106 108 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 PDCLQ13371 301 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 BYSLQ13895 437 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 AGR3Q8TD06 166 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 KRT35Q92764 455 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ACSF2Q96CM8 615 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ARHGEF26Q96DR7 871 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 TUBB6Q9BUF5 446 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 CATSPERBQ9H7T0 1116 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 SFMBT1Q9UHJ3 866 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 CCDC195A0A1B0GUA6 201 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 TARSL2A2RTX5 802 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 SLC2A3P11169 496 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 PSEN2P49810 448 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 MAP3K7CLP57077 242 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 CDKAL1Q5VV42 579 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ACAD10Q6JQN1 1059 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 SLC27A1Q6PCB7 646 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 TMEM199Q8N511 208 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF507Q8TCN5 953 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 SPDL1Q96EA4 605 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 TRAIPQ9BWF2 469 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 VCX3AQ9NNX9 186 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ITIH2P19823 946 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF280DQ6N043 979 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 PDCD7Q8N8D1 485 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 PDZD8Q8NEN9 1154 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 RBM15Q96T37 977 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 LATS2Q9NRM7 1088 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 SLC15A5A6NIM6 579 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ANP32DO95626 131 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 LGALS2P05162 132 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ACAT1P24752 427 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 MAGOHP61326 146 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 RBBP7Q16576 425 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 NFE2Q16621 373 aaPredicted RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 LRP10Q7Z4F1 713 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 POP1Q99575 1024 aaKnown RBP12.11□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF518BQ9C0D4 1074 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 THAP2Q9H0W7 228 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 PCDHB8Q9UN66 801 aa12.11□□□□□ -0.47
SYNE1-204ENST00000367248 LZTS3O60299 673 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 MAP3K6O95382 1288 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 SGPL1O95470 568 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 APRTP07741 180 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 EPHB2P29323 1055 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 CAPRIN1Q14444 709 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 STAT4Q14765 748 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 C2CD6Q53TS8 623 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 FBXO47Q5MNV8 452 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 EPM2AIP1Q7L775 607 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ADGRF2Q8IZF7 708 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 CYFIP2Q96F07 1278 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZBTB18Q99592 522 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ADAM2Q99965 735 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ASB7Q9H672 318 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 F9P00740 461 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ASS1P00966 412 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 MAP4P27816 1152 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 KLRG1Q96E93 195 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 SENP1Q9P0U3 644 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 A0A0G2JND7 137 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 E2F8A0AVK6 867 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 ZNF185O15231 689 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 PSMD3O43242 534 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 KITP10721 976 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 GZMAP12544 262 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 CYP11B1P15538 503 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 GGCXP38435 758 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 RPL10AP62906 217 aaKnown RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 NAA30Q147X3 362 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-204ENST00000367248 BTNL9Q6UXG8 535 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 RAB42Q8N4Z0 105 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 GPR63Q9BZJ6 419 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TRPM5Q9NZQ8 1165 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 MTSS1O43312 755 aa12.1□□□□□ -0.47
SYNE1-204ENST00000367248 TSPAN3O60637 253 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms