RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C1QTNF9BB2RNN3 333 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 FAM189A1O60320 539 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 PIGRP01833 764 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 F11P03951 625 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 C1QTNF9P0C862 333 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 CEACAM1P13688 526 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 CSRP1P21291 193 aaKnown RBP14.96□□□□□ -0.01
VPS29-201ENST00000360579 U2AF2P26368 475 aaKnown RBP eCLIP14.96□□□□□ -0.012e-6■■□□□ 11.9
VPS29-201ENST00000360579 GBP1P32455 592 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 ABCD1P33897 745 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 GALK1P51570 392 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 NLRP12P59046 1061 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 DMC1Q14565 340 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 TMEM132DQ14C87 1099 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 JADE1Q6IE81 842 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 MON1AQ86VX9 555 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 CDK5RAP3Q96JB5 506 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 MMTAG2Q9BU76 263 aaKnown RBP14.96□□□□□ -0.01
VPS29-201ENST00000360579 MSTO1Q9BUK6 570 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 TMEM9BQ9NQ34 198 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 TBX20Q9UMR3 447 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 LIMCH1Q9UPQ0 1083 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 PCDHB6Q9Y5E3 794 aa14.96□□□□□ -0.01
VPS29-201ENST00000360579 LNP1A1A4G5 178 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ANO9A1A5B4 782 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 CYB561D2O14569 222 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 KHNYNO15037 678 aaKnown RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 CSH1P0DML2 217 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 CSH2P0DML3 217 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ARSAP15289 507 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 GJA4P35212 333 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 TAF6P49848 677 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 TOB1P50616 345 aaPredicted RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 SLC12A3P55017 1021 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 FOXC1Q12948 553 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 USP39Q53GS9 565 aaKnown RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 SH3PXD2AQ5TCZ1 1133 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 TMEM150AQ86TG1 271 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 CCDC83Q8IWF9 413 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 CD101Q93033 1021 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ATP2A3Q93084 1043 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ADAM33Q9BZ11 813 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 CCSER1Q9C0I3 900 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ASB7Q9H672 318 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 ECT2Q9H8V3 914 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 FBRSL1Q9HCM7 1045 aaKnown RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 ABI2Q9NYB9 513 aaPredicted RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 UXTQ9UBK9 157 aaPredicted RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 CPSF3Q9UKF6 684 aaKnown RBP14.95□□□□□ -0.02
VPS29-201ENST00000360579 ODF2LQ9ULJ1 636 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 C2CD2Q9Y426 696 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 PCDHB5Q9Y5E4 795 aa14.95□□□□□ -0.02
VPS29-201ENST00000360579 WDFY3Q8IZQ1 3526 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 A0A0B4J269 797 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 DCLK1O15075 740 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 NFICP08651 508 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 PLA2G4BP0C869 781 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 HMGA1P17096 107 aaKnown RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 NMT1P30419 496 aaKnown RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 DGKEP52429 567 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 TSPY1Q01534 308 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 FAM160A1Q05DH4 1040 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 NR1H3Q13133 447 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 MTF1Q14872 753 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 IL17AQ16552 155 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 NFE2Q16621 373 aaPredicted RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 PMS2CLQ68D20 193 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 TXNDC8Q6A555 127 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 TSTD1Q8NFU3 115 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 OSCP1Q8WVF1 389 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 PYM1Q9BRP8 204 aaKnown RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 POLR3BQ9NW08 1133 aaPredicted RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 DUS2Q9NX74 493 aaKnown RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 KIF26AQ9ULI4 1882 aaPredicted RBP14.94□□□□□ -0.02
VPS29-201ENST00000360579 IGF2RP11717 2491 aa14.94□□□□□ -0.02
VPS29-201ENST00000360579 ZFYVE26Q68DK2 2539 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 K7ENM7 598 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 GIPC1O14908 333 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 IFNAR2P48551 515 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 POU5F1Q01860 360 aaKnown RBP14.93□□□□□ -0.02
VPS29-201ENST00000360579 PSMD2Q13200 908 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 COL9A2Q14055 689 aaPredicted RBP14.93□□□□□ -0.02
VPS29-201ENST00000360579 LRRTM3Q86VH5 581 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 PNMA5Q96PV4 448 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 TMEM206Q9H813 350 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.93□□□□□ -0.02
VPS29-201ENST00000360579 MAGED2Q9UNF1 606 aaPredicted RBP14.93□□□□□ -0.02
VPS29-201ENST00000360579 WASF3Q9UPY6 502 aa14.93□□□□□ -0.02
VPS29-201ENST00000360579 PRPF40AO75400 957 aaKnown RBP14.92□□□□□ -0.02
VPS29-201ENST00000360579 USP17L7P0C7H9 530 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 RPL10AP62906 217 aaKnown RBP14.92□□□□□ -0.02
VPS29-201ENST00000360579 SV2CQ496J9 727 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 WSCD1Q658N2 575 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 CYP2U1Q7Z449 544 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 MYCT1Q8N699 235 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 TRMT2BQ96GJ1 504 aaKnown RBP14.92□□□□□ -0.02
VPS29-201ENST00000360579 ZNF560Q96MR9 790 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 PARVGQ9HBI0 331 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 ABCB6Q9NP58 842 aa14.92□□□□□ -0.02
VPS29-201ENST00000360579 DPP3Q9NY33 737 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms