RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 STILQ15468 1287 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 ARHGAP29Q52LW3 1261 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 SPOUT1Q5T280 376 aaKnown RBP21.11■□□□□ 0.97
CLN3-205ENST00000359984 ARHGAP17Q68EM7 881 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 FUT10Q6P4F1 479 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 TNS4Q8IZW8 715 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 WDTC1Q8N5D0 677 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 LHX5Q9H2C1 402 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 INTUQ9ULD6 942 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 ATP8B3O60423 1300 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 SF3B1O75533 1304 aaKnown RBP eCLIP21.11■□□□□ 0.973e-9■■■■■ 164.7
CLN3-205ENST00000359984 PCSK1P29120 753 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 CDH5P33151 784 aaPredicted RBP21.11■□□□□ 0.97
CLN3-205ENST00000359984 CENPCQ03188 943 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 CCDC142Q17RM4 750 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 FAM171A1Q5VUB5 890 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 KCNT2Q6UVM3 1135 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 TXLNBQ8N3L3 684 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 TMEM35BQ8NCS4 154 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 SYT15Q9BQS2 421 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 CRTAC1Q9NQ79 661 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 TSPAN16Q9UKR8 245 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 CDH9Q9ULB4 789 aa21.11■□□□□ 0.97
CLN3-205ENST00000359984 ANKRD62A6NC57 917 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 M0QYV0 167 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 SYN3O14994 580 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 CCDC130P13994 396 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 YWHAHQ04917 246 aaPredicted RBP21.1■□□□□ 0.97
CLN3-205ENST00000359984 GOLGA7BQ2TAP0 167 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 HERC6Q8IVU3 1022 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 C1orf131Q8NDD1 294 aaKnown RBP21.1■□□□□ 0.97
CLN3-205ENST00000359984 IGSF21Q96ID5 467 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 ZNF558Q96NG5 402 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 SLC9A7Q96T83 725 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 ACBD6Q9BR61 282 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 ZBED2Q9BTP6 218 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 TSGA10Q9BZW7 698 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 ZNF518BQ9C0D4 1074 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 GUCA1BQ9UMX6 200 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 CEP83Q9Y592 693 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 NR2E3Q9Y5X4 410 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 TSC2P49815 1807 aa21.1■□□□□ 0.97
CLN3-205ENST00000359984 KRT86O43790 486 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 TMEM253P0C7T8 217 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 ABCB4P21439 1286 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 NSFP46459 744 aaKnown RBP21.09■□□□□ 0.97
CLN3-205ENST00000359984 ELAVL2Q12926 359 aaKnown RBP21.09■□□□□ 0.97
CLN3-205ENST00000359984 RASIP1Q5U651 963 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 THEM5Q8N1Q8 247 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 UBA3Q8TBC4 463 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 PHOSPHO2Q8TCD6 241 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 THAP2Q9H0W7 228 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 INSL6Q9Y581 213 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 OAZ2O95190 189 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 EFEMP2O95967 443 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 ATP2A2P16615 1042 aaKnown RBP21.09■□□□□ 0.97
CLN3-205ENST00000359984 LAG3P18627 525 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 FGFR3P22607 806 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 MDH1BQ5I0G3 518 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 NYAP1Q6ZVC0 841 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 TAS1R1Q7RTX1 841 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 CEP57Q86XR8 500 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 COLGALT1Q8NBJ5 622 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 OR10T2Q8NGX3 314 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 SLC2A14Q8TDB8 520 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 B3GALT6Q96L58 329 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 IRX2Q9BZI1 471 aaPredicted RBP21.09■□□□□ 0.97
CLN3-205ENST00000359984 MTIF3Q9H2K0 278 aaKnown RBP21.09■□□□□ 0.97
CLN3-205ENST00000359984 CYTH4Q9UIA0 394 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 SALL4Q9UJQ4 1053 aa21.09■□□□□ 0.97
CLN3-205ENST00000359984 MYBPHLA2RUH7 354 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 GPD2P43304 727 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 PKDCCQ504Y2 493 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 VARS2Q5ST30 1063 aaKnown RBP21.08■□□□□ 0.97
CLN3-205ENST00000359984 TTC30AQ86WT1 665 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 PHF13Q86YI8 300 aaPredicted RBP21.08■□□□□ 0.97
CLN3-205ENST00000359984 MCOLN2Q8IZK6 566 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 SLC39A11Q8N1S5 342 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 CTNNBL1Q8WYA6 563 aaPredicted RBP21.08■□□□□ 0.97
CLN3-205ENST00000359984 ARHGEF26Q96DR7 871 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 C16orf45Q96MC5 204 aaPredicted RBP21.08■□□□□ 0.97
CLN3-205ENST00000359984 TMEM209Q96SK2 561 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 RAD9AQ99638 391 aa21.08■□□□□ 0.97
CLN3-205ENST00000359984 HNRNPABQ99729 332 aaKnown RBP21.08■□□□□ 0.97
CLN3-205ENST00000359984 ADORA2BP29275 332 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 MAGEA10P43363 369 aaPredicted RBP21.07■□□□□ 0.96
CLN3-205ENST00000359984 TERF1P54274 439 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 MRPL58Q14197 206 aaKnown RBP21.07■□□□□ 0.96
CLN3-205ENST00000359984 INTS6LQ5JSJ4 861 aaKnown RBP21.07■□□□□ 0.96
CLN3-205ENST00000359984 MON1BQ7L1V2 547 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 FUKQ8N0W3 1084 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 FIBCD1Q8N539 461 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 PKMYT1Q99640 499 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 VN1R3Q9BXE9 311 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 GTF3C4Q9UKN8 822 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 PAXBP1Q9Y5B6 917 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 BTNL10A8MVZ5 291 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 CLDN5O00501 218 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 CDR1P51861 262 aa21.07■□□□□ 0.96
CLN3-205ENST00000359984 GPC5P78333 572 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms