RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 LRRC38Q5VT99 294 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 LLGL2Q6P1M3 1020 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 TRIM72Q6ZMU5 477 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 CAPN12Q6ZSI9 719 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 PCGF5Q86SE9 256 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 PDSS2Q86YH6 399 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 TREML1Q86YW5 311 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 RBM12BQ8IXT5 1001 aaKnown RBP10.15□□□□□ -0.78
HOXA1-201ENST00000343060 ULK2Q8IYT8 1036 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 NME8Q8N427 588 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 RBM15BQ8NDT2 890 aaKnown RBP10.15□□□□□ -0.78
HOXA1-201ENST00000343060 NAT14Q8WUY8 206 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 FBXL18Q96ME1 805 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 C1orf21Q9H246 121 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 ZNF148Q9UQR1 794 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 PCDHB2Q9Y5E7 798 aa10.15□□□□□ -0.78
HOXA1-201ENST00000343060 SMIM31A0A1B0GVY4 71 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 B2RBV5 119 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 KCNQ2O43526 872 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 STIP1P31948 543 aaKnown RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 NOP14P78316 857 aaKnown RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 MAMLD1Q13495 774 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 MYBPC3Q14896 1274 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 HSF5Q4G112 596 aaPredicted RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 CEP55Q53EZ4 464 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 HP1BP3Q5SSJ5 553 aaPredicted RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 C6orf163Q5TEZ5 329 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 HAUS6Q7Z4H7 955 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 PHF13Q86YI8 300 aaPredicted RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 KLHL23Q8NBE8 558 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 CPA5Q8WXQ8 436 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 MFSD14AQ96MC6 490 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 C7orf26Q96N11 449 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 TEKT3Q9BXF9 490 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 MRPL47Q9HD33 250 aaKnown RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SLC7A8Q9UHI5 535 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 PPM1HQ9ULR3 514 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SSX2IPQ9Y2D8 614 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 GMEB1Q9Y692 573 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SCINQ9Y6U3 715 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 AP1G1O43747 822 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 NDUFB10O96000 172 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 CRY2Q49AN0 593 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 CDC42EP5Q6NZY7 148 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 NAT8LQ8N9F0 302 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 OR6Y1Q8NGX8 325 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 FBXO27Q8NI29 283 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SLC35B2Q8TB61 432 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 CERKQ8TCT0 537 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 RIT2Q99578 217 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 LBHD1Q9BQE6 289 aaPredicted RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 C12orf65Q9H3J6 166 aaKnown RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 NDUFA13Q9P0J0 144 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 TAGLN3Q9UI15 199 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 ZHX2Q9Y6X8 837 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 SMCHD1A6NHR9 2005 aa10.14□□□□□ -0.79
HOXA1-201ENST00000343060 ZNF335Q9H4Z2 1342 aaPredicted RBP10.14□□□□□ -0.79
HOXA1-201ENST00000343060 GOLGA8IPA6NC78 632 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 GOLGA8JA6NMD2 632 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 E5RJQ4 531 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 H3BRJ5 948 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 IPO5O00410 1097 aaKnown RBP10.13□□□□□ -0.79
HOXA1-201ENST00000343060 LPXNO60711 386 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 BANF1O75531 89 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 KRT5P13647 590 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 BGNP21810 368 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 SSTR1P30872 391 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 DSG3P32926 999 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 GRIA2P42262 883 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 BPIFB4P59827 614 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 NOMO3P69849 1222 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ITGA9Q13797 1035 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 SHROOM1Q2M3G4 852 aaPredicted RBP10.13□□□□□ -0.79
HOXA1-201ENST00000343060 MSS51Q4VC12 460 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 PPP1R2P3Q6NXS1 205 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 MFSD7Q6UXD7 560 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 PHLDB2Q86SQ0 1253 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ALYREFQ86V81 257 aaKnown RBP10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ANKMY2Q8IV38 441 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 PPIL6Q8IXY8 311 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 PYROXD1Q8WU10 500 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 FAM172AQ8WUF8 416 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ZNF577Q9BSK1 485 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 EBF3Q9H4W6 596 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 TOPORSQ9NS56 1045 aaPredicted RBP10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ARMCX1Q9P291 453 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 hCG_1818297A0A087WSY0 165 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 SPECC1L-ADORA2AF8WAN1 911 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 LYPLA2O95372 231 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 CALCAP01258 141 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ASLP04424 464 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 SPATA31D3P0C874 917 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 KRT10P13645 584 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 VAV1P15498 845 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 ECE1P42892 770 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 RARRES1P49788 294 aa10.13□□□□□ -0.79
HOXA1-201ENST00000343060 C1QBPQ07021 282 aaKnown RBP10.13□□□□□ -0.79
HOXA1-201ENST00000343060 CBLBQ13191 982 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms