RNA–Protein interactions for RNA: ENST00000342415.5

SNRNP48-201, Transcript of small nuclear ribonucleoprotein U11/U12 subunit 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP48, Length 4,173 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP48-201ENST00000342415 TMEM120AQ9BXJ8 343 aa13.01□□□□□ -0.33
SNRNP48-201ENST00000342415 CEP41Q9BYV8 373 aa13.01□□□□□ -0.33
SNRNP48-201ENST00000342415 LRRC4Q9HBW1 653 aa13.01□□□□□ -0.33
SNRNP48-201ENST00000342415 CYP26B1Q9NR63 512 aa13.01□□□□□ -0.33
SNRNP48-201ENST00000342415 ZFATQ9P243 1243 aa13.01□□□□□ -0.33
SNRNP48-201ENST00000342415 EME2A4GXA9 379 aaPredicted RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 BTNL10A8MVZ5 291 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 MX2P20592 715 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 ELK3P41970 407 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 POU5F1BQ06416 359 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 GABPAQ06546 454 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 FASTKD3Q14CZ7 662 aaKnown RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 AMHR2Q16671 573 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 SNX30Q5VWJ9 437 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 SAMD7Q7Z3H4 446 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 ATXN2LQ8WWM7 1075 aaKnown RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 ART4Q93070 314 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 RNF19AQ9NV58 838 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 SNX9Q9Y5X1 595 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 C2orf71A6NGG8 1288 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 O00370 1275 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 ICAM1P05362 532 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 AQP5P55064 265 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 SPRED3Q2MJR0 410 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 PPP1R2P3Q6NXS1 205 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 FAM71AQ8IYT1 594 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 FAF1Q9UNN5 650 aaPredicted RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 MYH6P13533 1939 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 RPTORQ8N122 1335 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 CASQ2O14958 399 aaPredicted RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 GNAT1P11488 350 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 ATP6V1B1P15313 513 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 TMEM62Q0P6H9 643 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 XRCC4Q13426 336 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 ABRAQ8N0Z2 381 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 DDX50Q9BQ39 737 aaKnown RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 PDCD2LQ9BRP1 358 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 MTFR1LQ9H019 292 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 AGO4Q9HCK5 861 aaKnown RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 FBXO6Q9NRD1 293 aaPredicted RBP13□□□□□ -0.33
SNRNP48-201ENST00000342415 CISHQ9NSE2 258 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 FER1L4A9Z1Z3 1794 aa13□□□□□ -0.33
SNRNP48-201ENST00000342415 CYP3A7-CYP3A51PA0A087WV96 503 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SLC26A4O43511 780 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CYP3A7P24462 503 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CAP2P40123 477 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 VHLP40337 213 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CYTH1Q15438 398 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 UGCGQ16739 394 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 LRRC23Q53EV4 343 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 HYIQ5T013 277 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 KRT80Q6KB66 452 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CYP4X1Q8N118 509 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 GALNT4Q8N4A0 578 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 EXD1Q8NHP7 514 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 PGBD4Q96DM1 585 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SNX25Q9H3E2 840 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 ADA2Q9NZK5 511 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 DNALI1O14645 258 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SNRPAP09012 282 aaKnown RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SNHG28P0DPA3 235 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 RANBP1P43487 201 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SLC12A1Q13621 1099 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 KPNB1Q14974 876 aaKnown RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 RASA2Q15283 850 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CENPTQ96BT3 561 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 Q9H521 79 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 ACAD9Q9H845 621 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 GRHL1Q9NZI5 618 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 PACSIN3Q9UKS6 424 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 MED1Q15648 1581 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 PSTPIP1O43586 416 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 DNAJC6O75061 913 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 RASSF9O75901 435 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 UNC5CO95185 931 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 VIL1P09327 827 aaKnown RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 ENO3P13929 434 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 DRG2P55039 364 aaKnown RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 MTFR1Q15390 333 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 TRIML2Q8N7C3 387 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SHC3Q92529 594 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 HDAC11Q96DB2 347 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CCDC97Q96F63 343 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 NIF3L1Q9GZT8 377 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 DCLRE1BQ9H816 532 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 ANKEF1Q9NU02 776 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 NCANO14594 1321 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 MEI4A8MW99 385 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 NOL3O60936 208 aaKnown RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 HOXD13P35453 343 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 RFC5P40937 340 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 SGSM1Q2NKQ1 1148 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 FAM47CQ5HY64 1035 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 ZDHHC24Q6UX98 284 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 GMCL1P1Q8NEA9 526 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 CENPKQ9BS16 269 aa12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 WRAP73Q9P2S5 460 aaPredicted RBP12.99□□□□□ -0.33
SNRNP48-201ENST00000342415 KAT6AQ92794 2004 aa12.98□□□□□ -0.33
SNRNP48-201ENST00000342415 PTPN4P29074 926 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms