RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ERAP1Q9NZ08 941 aa10.92□□□□□ -0.66
LIMA1-201ENST00000341247 GOLGA6L7A0A1B0GV03 622 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 POC1B-GALNT4F8VUJ3 575 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 MAP3K6O95382 1288 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 GAD2Q05329 585 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ENPEPQ07075 957 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ZKSCAN8Q15776 578 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 TTC31Q49AM3 519 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 LRRN4Q8WUT4 740 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CHMP6Q96FZ7 201 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ELAC2Q9BQ52 826 aaKnown RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 SYT17Q9BSW7 474 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 PTPRHQ9HD43 1115 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 DNAJC25-GNG10A0A024R161 153 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 LIASO43766 372 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 C22orf31O95567 290 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 AGTP01019 485 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ERBB2P04626 1255 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ADORA2AP29274 412 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 MMP13P45452 471 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 RGS7P49802 495 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 AP3M2P53677 418 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ERMARDQ5T6L9 678 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 SH3PXD2AQ5TCZ1 1133 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 TRMT10CQ7L0Y3 403 aaKnown RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CCDC125Q86Z20 511 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ANKMY2Q8IV38 441 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 RCOR2Q8IZ40 523 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CACNA2D3Q8IZS8 1091 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 C12orf29Q8N999 325 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 PPM1EQ8WY54 764 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 KAT2BQ92831 832 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 FAM129AQ9BZQ8 928 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ELOVL4Q9GZR5 314 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CNOT10Q9H9A5 744 aaKnown RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 TMEM120BA0PK00 339 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 TJP3O95049 919 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 GH1P01241 217 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 ARF4P18085 180 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 RAD23BP54727 409 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 TMED2Q15363 201 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CCDC121Q6ZUS5 278 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 MICALCLQ6ZW33 695 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 SLC10A4Q96EP9 437 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 RBM41Q96IZ5 413 aaKnown RBP10.91□□□□□ -0.66
LIMA1-201ENST00000341247 APOL6Q9BWW8 343 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CALN1Q9BXU9 219 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 HES2Q9Y543 173 aa10.91□□□□□ -0.66
LIMA1-201ENST00000341247 CST8O60676 142 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 DRD4P21917 467 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 MAN1A1P33908 653 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 EPHX2P34913 555 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 PHKA2P46019 1235 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 PPIL2Q13356 520 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 KIZQ2M2Z5 673 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 GLRA4Q5JXX5 417 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 SPDYCQ5MJ68 293 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 GKAP1Q5VSY0 366 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-201ENST00000341247 ARFGAP1Q8N6T3 406 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 VPS37BQ9H9H4 285 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 PECAM1P16284 738 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-201ENST00000341247 PROZP22891 400 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 GDF10P55107 478 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 ARHGAP1Q07960 439 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 AMHR2Q16671 573 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 ATXN2LQ8WWM7 1075 aaKnown RBP10.9□□□□□ -0.66
LIMA1-201ENST00000341247 SLCO2A1Q92959 643 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 PIWIL1Q96J94 861 aaKnown RBP10.9□□□□□ -0.66
LIMA1-201ENST00000341247 LPIN3Q9BQK8 851 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 NEU2Q9Y3R4 380 aa10.9□□□□□ -0.66
LIMA1-201ENST00000341247 B4GALT4O60513 344 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 SPAG7O75391 227 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MAGEA4P43358 317 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 SURF1Q15526 300 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 SLC10A6Q3KNW5 377 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 FAM102AQ5T9C2 384 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 KCNV1Q6PIU1 500 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 FASTKD5Q7L8L6 764 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 SLC4A11Q8NBS3 891 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 C3orf20Q8ND61 904 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 ACTL9Q8TC94 416 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 THOC1Q96FV9 657 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 HPDLQ96IR7 371 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 TNFSF13BQ9Y275 285 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 hCG_1818297A0A087WSY0 165 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 TCRBV5S1A1TA0A578 114 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 LRCH4O75427 683 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MICAL2O94851 1124 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 LSM8O95777 96 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 BRAFP15056 766 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 EIF4BP23588 611 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 KLRC2P26717 231 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 ATP11AP98196 1134 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 OTUD4Q01804 1114 aaKnown RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 PTPN11Q06124 597 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 TFDP3Q5H9I0 405 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 MAP1SQ66K74 1059 aaPredicted RBP10.89□□□□□ -0.67
LIMA1-201ENST00000341247 TAOK1Q7L7X3 1001 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 ZBED8Q8IZ13 594 aa10.89□□□□□ -0.67
LIMA1-201ENST00000341247 PDZD7Q9H5P4 517 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms