RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 C1orf220Q5T0J3 134 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 SH3PXD2AQ5TCZ1 1133 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 RSPH3Q86UC2 560 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 FITM2Q8N6M3 262 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 CLEC4DQ8WXI8 215 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 RBM41Q96IZ5 413 aaKnown RBP12.54□□□□□ -0.4
USP1-201ENST00000339950 OSBPL1AQ9BXW6 950 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 XPNPEP1Q9NQW7 623 aa12.54□□□□□ -0.4
USP1-201ENST00000339950 COPEO14579 308 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 BGNP21810 368 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 GLRA2P23416 452 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TAF1BQ53T94 588 aaPredicted RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 TMCO4Q5TGY1 634 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 EEF1DP3Q658K8 133 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 SLC39A4Q6P5W5 647 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 ABRAQ8N0Z2 381 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 LPIN3Q9BQK8 851 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 MECRQ9BV79 373 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 MYLK2Q9H1R3 596 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 VPS11Q9H270 941 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 FBXO6Q9NRD1 293 aaPredicted RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 HEY2Q9UBP5 337 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 DHX15O43143 795 aaKnown RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 HOXA7P31268 230 aaPredicted RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 BCAR1P56945 870 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TMEM132BQ14DG7 1078 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 MAP4K3Q8IVH8 894 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 LMO3Q8TAP4 145 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TRIM11Q96F44 468 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 BORCS6Q96GS4 357 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 ACAP3Q96P50 834 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 SLC38A10Q9HBR0 1119 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 OPHN1O60890 802 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 OATP04181 439 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TXNP10599 105 aaKnown RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 RABGGTBP53611 331 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 BACE1P56817 501 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 ANKRD22Q5VYY1 191 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 ACOT1Q86TX2 421 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 ARID3BQ8IVW6 561 aaPredicted RBP12.53□□□□□ -0.4
USP1-201ENST00000339950 DNAAF3Q8N9W5 541 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TCP10LQ8TDR4 215 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 HESX1Q9UBX0 185 aa12.53□□□□□ -0.4
USP1-201ENST00000339950 TIAM2Q8IVF5 1701 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 PIK3CDO00329 1044 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 GTF2A2P52657 109 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 ARFIP2P53365 341 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 EFCAB12Q6NXP0 572 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 SPOCD1Q6ZMY3 1216 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 TMEM192Q8IY95 271 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 ASCC2Q9H1I8 757 aaPredicted RBP12.52□□□□□ -0.4
USP1-201ENST00000339950 VCXQ9H320 206 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 KCND2Q9NZV8 630 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 NCANO14594 1321 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 MROH7Q68CQ1 1323 aa12.52□□□□□ -0.4
USP1-201ENST00000339950 TRIM49D1C9J1S8 452 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 GOLGA8TH3BQL2 631 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 KIF1CO43896 1103 aaKnown RBP12.52□□□□□ -0.41
USP1-201ENST00000339950 PYGBP11216 843 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 PTK7Q13308 1070 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 SLC1A5Q15758 541 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 BTNL9Q6UXG8 535 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 SCUBE3Q8IX30 993 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 VTI1AQ96AJ9 217 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 MED10Q9BTT4 135 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 CAPN9O14815 690 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 USP12O75317 370 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 SLC4A1P02730 911 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 FOXN2P32314 431 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 ELK3P41970 407 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 RANBP1P43487 201 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 MMP13P45452 471 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 SP2Q02086 613 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 FAM160B1Q5W0V3 765 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 C16orf46Q6P387 395 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 BBOF1Q8ND07 529 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 KIF12Q96FN5 646 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 MBOAT7Q96N66 472 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 MRPL4Q9BYD3 311 aaKnown RBP12.52□□□□□ -0.41
USP1-201ENST00000339950 ZNF395Q9H8N7 513 aaPredicted RBP12.52□□□□□ -0.41
USP1-201ENST00000339950 SLC17A7Q9P2U7 560 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 UBIAD1Q9Y5Z9 338 aa12.52□□□□□ -0.41
USP1-201ENST00000339950 ZNF541Q9H0D2 1346 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 CES2O00748 559 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 RFX1P22670 979 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 GDF10P55107 478 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 STAT4Q14765 748 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 SLFN12LQ6IEE8 588 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 VSIG10LQ86VR7 867 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 POU5F2Q8N7G0 328 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 TTC8Q8TAM2 541 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 NDRG1Q92597 394 aaKnown RBP12.51□□□□□ -0.41
USP1-201ENST00000339950 ART4Q93070 314 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 PGM2Q96G03 612 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 PAFAH2Q99487 392 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 ANKEF1Q9NU02 776 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 ATP9BO43861 1147 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 FAM47CQ5HY64 1035 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 NLRP9Q7RTR0 991 aa12.51□□□□□ -0.41
USP1-201ENST00000339950 UNC45BQ8IWX7 931 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms