RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 SEPT5Q99719 369 aaPredicted RBP16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 CYP3A43Q9HB55 503 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 CRTAC1Q9NQ79 661 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 PCDHB5Q9Y5E4 795 aa16.97■□□□□ 0.31
CCDC28A-201ENST00000332797 C2orf16Q68DN1 1984 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 SOAT2O75908 522 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 PAPLNO95428 1278 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 PRKCSHP14314 528 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 ORC1Q13415 861 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 MAN2A1Q16706 1144 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 MGAT5BQ3V5L5 792 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 TCP11X2Q5H9J9 407 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 CYP26C1Q6V0L0 522 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 SPATA2LQ8IUW3 424 aaPredicted RBP16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 MYLPFQ96A32 169 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 ARID3AQ99856 593 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 LPIN3Q9BQK8 851 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 TUBGCP2Q9BSJ2 902 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 FUCA2Q9BTY2 467 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 POMKQ9H5K3 350 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 FANCLQ9NW38 375 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 HMGXB4Q9UGU5 601 aa16.96■□□□□ 0.31
CCDC28A-201ENST00000332797 PES1O00541 588 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 PTPN1P18031 435 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 EEF1GP26641 437 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 ALDH1A3P47895 512 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 NDST1P52848 882 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 PLD1Q13393 1074 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 MAPRE1Q15691 268 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 CDKAL1Q5VV42 579 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 FAM171BQ6P995 826 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 C4orf50Q6ZRC1 276 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 GRASPQ7Z6J2 395 aaPredicted RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 ELMOD1Q8N336 334 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 B3GALNT2Q8NCR0 500 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 MYCBPAPQ8TBZ2 947 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 NT5C1BQ96P26 610 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 RHOBTB2Q9BYZ6 727 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 INTS2Q9H0H0 1204 aaKnown RBP16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 GCNT4Q9P109 453 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 HSFX1Q9UBD0 423 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 C5orf42Q9H799 3197 aa16.95■□□□□ 0.3
CCDC28A-201ENST00000332797 CLUHO75153 1309 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 POU2F2P09086 479 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 HAPLN1P10915 354 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 TUFMP49411 452 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 CYP27A1Q02318 531 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 INCA1Q0VD86 236 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 CUL2Q13617 745 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 VWA3BQ502W6 1294 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 ACOT1Q86TX2 421 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 UNC93AQ86WB7 457 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 EHBP1Q8NDI1 1231 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 LMO3Q8TAP4 145 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 ADAMTS19Q8TE59 1207 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 FAXDC2Q96IV6 333 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 TNIP3Q96KP6 325 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 BPIFA3Q9BQP9 254 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 CRACR2AQ9BSW2 395 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 PHF7Q9BWX1 381 aaPredicted RBP16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 HCFC1R1Q9NWW0 138 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 TAB2Q9NYJ8 693 aa16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 TCF20Q9UGU0 1960 aaKnown RBP16.94■□□□□ 0.3
CCDC28A-201ENST00000332797 CILPO75339 1184 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 SP100P23497 879 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 CYP2F1P24903 491 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ZNF165P49910 485 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 EPHB3P54753 998 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 NTHL1P78549 312 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 NCAPHQ15003 741 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 MIIPQ5JXC2 388 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 PPM1KQ8N3J5 372 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 FAM200AQ8TCP9 573 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 PCED1BQ96HM7 432 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 TWNKQ96RR1 684 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 NDST4Q9H3R1 872 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 WDR6Q9NNW5 1121 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ABCB6Q9NP58 842 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 CISHQ9NSE2 258 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 CEP72Q9P209 647 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 DNMT3BQ9UBC3 853 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 DENND4AQ7Z401 1863 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ATF6P18850 670 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 TRIM21P19474 475 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 TBXAS1P24557 533 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 KRT31Q15323 416 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 CFAP221Q4G0U5 840 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ZNF394Q53GI3 561 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 IQCEQ6IPM2 695 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 GBP6Q6ZN66 633 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ARHGEF19Q8IW93 802 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ADHFE1Q8IWW8 467 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 DHX40Q8IX18 779 aaKnown RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 TTC39CQ8N584 583 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 FUBP3Q96I24 572 aaKnown RBP eCLIP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 RPGRIP1Q96KN7 1286 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 ZNF512Q96ME7 567 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 NECAB3Q96P71 396 aaPredicted RBP16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 CORO1BQ9BR76 489 aa16.93■□□□□ 0.3
CCDC28A-201ENST00000332797 NT5C1AQ9BXI3 368 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms