RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 LRRC36Q1X8D7 754 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TRIM65Q6PJ69 517 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TRIML2Q8N7C3 387 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 SLC20A1Q8WUM9 679 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 CXorf56Q9H5V9 222 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 IL1RL2Q9HB29 575 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 CD274Q9NZQ7 290 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TDRD10Q5VZ19 366 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 CAPRIN2Q6IMN6 1127 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 SYTL5Q8TDW5 730 aaPredicted RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 SPATC1LQ9H0A9 340 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 ZSCAN9O15535 394 aaPredicted RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 LRG1P02750 347 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TCN1P20061 433 aaPredicted RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 STAT4Q14765 748 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 PGM5Q15124 567 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 PTF1AQ7RTS3 328 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 EIF2AQ9BY44 585 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 ENTPD7Q9NQZ7 604 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 ITM2BQ9Y287 266 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 SEC24DO94855 1032 aaPredicted RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 MAGEA4P43358 317 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 AARSP49588 968 aaKnown RBP eCLIP10.62□□□□□ -0.711e-6■■■■■ 36.1
CHD3-201ENST00000330494 SKOR1P84550 965 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 LAMTOR4Q0VGL1 99 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 PCNX4Q63HM2 1172 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TARSL2A2RTX5 802 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 MAN1A2O60476 641 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 RBP3P10745 1247 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 MYL6P60660 151 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 CNTN2Q02246 1040 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 MPZL3Q6UWV2 235 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 DTX3LQ8TDB6 740 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 TFB1MQ8WVM0 346 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 LZICQ8WZA0 190 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 ING2Q9H160 280 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 CATSPERBQ9H7T0 1116 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 EML4Q9HC35 981 aaKnown RBP10.62□□□□□ -0.71
CHD3-201ENST00000330494 MST1RQ04912 1400 aa10.62□□□□□ -0.71
CHD3-201ENST00000330494 RNF103-CHMP3A0A140T963 221 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 IL1R1P14778 569 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 CYP2C19P33261 490 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ARHGEF7Q14155 803 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 PTRHD1Q6GMV3 140 aaKnown RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 ADGRF2Q8IZF7 708 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 EMC1Q8N766 993 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SNX31Q8N9S9 440 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 MDM1Q8TC05 714 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.61□□□□□ -0.71
CHD3-201ENST00000330494 SLC30A1Q9Y6M5 507 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ENO4A6NNW6 628 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 OGTO15294 1046 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 NAMPTP43490 491 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 CTCFP49711 727 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 STILQ15468 1287 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TATDN2Q93075 761 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TSSK1BQ9BXA7 367 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 OSGEPQ9NPF4 335 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ACADSBP45954 432 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TGFB2P61812 414 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 GTF2H3Q13889 308 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 DCP1BQ8IZD4 617 aaKnown RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 SGF29Q96ES7 293 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SCHIP1Q9P0W5 487 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 ATP11BQ9Y2G3 1177 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ADGRB1O14514 1584 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 REREQ9P2R6 1566 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 A0A1W2PQJ5 194 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SYCE1LA8MT33 242 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TMEM253P0C7T8 217 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ENO3P13929 434 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 LRRC74AQ0VAA2 488 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 GMCL1P1Q8NEA9 526 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 GMCL1Q96IK5 515 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 APOL2Q9BQE5 337 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 COL5A2P05997 1499 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 FAM86B1E9PN63 330 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 DDHD2O94830 711 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 FAM86B2P0C5J1 330 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 PTK2BQ14289 1009 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SNX17Q15036 470 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 EFHC1Q5JVL4 640 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TRAPPC11Q7Z392 1133 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 TAS1R2Q8TE23 839 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SLC16A10Q8TF71 515 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 SCFD1Q8WVM8 642 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 CYFIP2Q96F07 1278 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 PGLYRP2Q96PD5 576 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 ZIM3Q96PE6 472 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 V9GYQ6 96 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 FAM47DPA6NHR8 397 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 PQBP1O60828 265 aaKnown RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 ITIH2P19823 946 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 COILP38432 576 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 HERVK_113P62684 666 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 PLIN5Q00G26 463 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 CCNI2Q6ZMN8 369 aaPredicted RBP10.61□□□□□ -0.71
CHD3-201ENST00000330494 BLOC1S5Q8TDH9 187 aa10.61□□□□□ -0.71
CHD3-201ENST00000330494 GTF3C2Q8WUA4 911 aaPredicted RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms