RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 DDX43Q9NXZ2 648 aaKnown RBP10.65□□□□□ -0.71
HMGB3-201ENST00000325307 ARHGEF37A1IGU5 675 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 M0QYV0 167 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 NRP1O14786 923 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 TRAPPC3O43617 180 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 RTN2O75298 545 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 DGKIO75912 1065 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 VDRP11473 427 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 ERCC6LQ2NKX8 1250 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 TRIM72Q6ZMU5 477 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 OLIG1Q8TAK6 271 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 RSPH1Q8WYR4 309 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 YME1L1Q96TA2 773 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 ZBED2Q9BTP6 218 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 STXBP5LQ9Y2K9 1186 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 TADA3O75528 432 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 URI1O94763 535 aaPredicted RBP10.64□□□□□ -0.71
HMGB3-201ENST00000325307 GZMAP12544 262 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 WARSP23381 471 aaKnown RBP10.64□□□□□ -0.71
HMGB3-201ENST00000325307 NOP2P46087 812 aaKnown RBP10.64□□□□□ -0.71
HMGB3-201ENST00000325307 LHX1P48742 406 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 SLC11A1P49279 550 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 ALDH7A1P49419 539 aaKnown RBP10.64□□□□□ -0.71
HMGB3-201ENST00000325307 BTG3Q14201 252 aaPredicted RBP10.64□□□□□ -0.71
HMGB3-201ENST00000325307 OSTM1Q86WC4 334 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 ZSWIM1Q9BR11 485 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 KIAA1257Q9ULG3 409 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 MICAL3Q7RTP6 2002 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 CASQ1P31415 396 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 SATB1Q01826 763 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 CEP57Q86XR8 500 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM35BQ8NCS4 154 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 SUSD3Q96L08 255 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 MYO1AQ9UBC5 1043 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 DSEQ9UL01 958 aa10.64□□□□□ -0.71
HMGB3-201ENST00000325307 BUB1O43683 1085 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 PAX3P23760 479 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 AARSP49588 968 aaKnown RBP eCLIP10.63□□□□□ -0.71
HMGB3-201ENST00000325307 GOLGA7BQ2TAP0 167 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 OVOS1Q6IE37 1185 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ACAD10Q6JQN1 1059 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 DENND1BQ6P3S1 775 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 FBXO38Q6PIJ6 1188 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 C16orf59Q7L2K0 433 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF771Q7L3S4 317 aaPredicted RBP10.63□□□□□ -0.71
HMGB3-201ENST00000325307 C1orf131Q8NDD1 294 aaKnown RBP10.63□□□□□ -0.71
HMGB3-201ENST00000325307 TSPYL1Q9H0U9 437 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 THAP2Q9H0W7 228 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 HESX1Q9UBX0 185 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ADAM28Q9UKQ2 775 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ATP2C2O75185 946 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 MICAL2O94851 1124 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ADORA2BP29275 332 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 C2CD6Q53TS8 623 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF569Q5MCW4 686 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 PSRC1Q6PGN9 363 aaPredicted RBP10.63□□□□□ -0.71
HMGB3-201ENST00000325307 CD300LGQ6UXG3 332 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 B3GALNT2Q8NCR0 500 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 UBA3Q8TBC4 463 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ZNF653Q96CK0 615 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 C11orf70Q9BRQ4 267 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 CARD6Q9BX69 1037 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 SYNCQ9H7C4 482 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 TSPAN16Q9UKR8 245 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 NME7Q9Y5B8 376 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 MYH10P35580 1976 aa10.63□□□□□ -0.71
HMGB3-201ENST00000325307 ANKRD62A6NC57 917 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 O00370 1275 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 GALTP07902 379 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CCDC130P13994 396 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PCSK1P29120 753 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 EPHB4P54760 987 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CNGA2Q16280 664 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PPP1R26Q5T8A7 1209 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PHLDB2Q86SQ0 1253 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 THEM5Q8N1Q8 247 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 SYT15Q9BQS2 421 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 MED10Q9BTT4 135 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 ISCUQ9H1K1 167 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 ST7Q9NRC1 585 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 NENFQ9UMX5 172 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 M0QZQ0 153 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 ATMINO43313 823 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 MOCS3O95396 460 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 LSM8O95777 96 aaKnown RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 CYP1A1P04798 512 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 PTPN1P18031 435 aaKnown RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 NOMO3P69849 1222 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 YWHAHQ04917 246 aaPredicted RBP10.62□□□□□ -0.71
HMGB3-201ENST00000325307 STILQ15468 1287 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 MDH1BQ5I0G3 518 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 FAM171A1Q5VUB5 890 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 MMS22LQ6ZRQ5 1243 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 LIMS2Q7Z4I7 341 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 SLC35F6Q8N357 371 aa10.62□□□□□ -0.71
HMGB3-201ENST00000325307 TMEM175Q9BSA9 504 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms