RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 NUB1Q9Y5A7 615 aa13.3□□□□□ -0.28
RETREG3-201ENST00000309428 C2orf71A6NGG8 1288 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 TTC4O95801 387 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 VTNP04004 478 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 ATP6V1B1P15313 513 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 PTPRAP18433 802 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 PSMA2P25787 234 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 PTDSS1P48651 473 aaKnown RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 CUL3Q13618 768 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 SLC39A4Q6P5W5 647 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 RASSF3Q86WH2 238 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 LRRC43Q8N309 656 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 C7orf43Q8WVR3 580 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 HEXIM2Q96MH2 286 aaKnown RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 XPNPEP1Q9NQW7 623 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 CHMP2BQ9UQN3 213 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 SLX4Q8IY92 1834 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 LPXNO60711 386 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 DGAT1O75907 488 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 MMP13P45452 471 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 MRPS35P82673 323 aaKnown RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 ZNF699Q32M78 642 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 TXNRD3NBQ6F5E7 133 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 C1orf228Q6PIY5 440 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 GLIS1Q8NBF1 620 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 NLGN2Q8NFZ4 835 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 SPATA33Q96N06 139 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 FHDC1Q9C0D6 1143 aaPredicted RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 VCX3AQ9NNX9 186 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 GTF3C4Q9UKN8 822 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 FIS1Q9Y3D6 152 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 LAMB2P55268 1798 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 SCN9AQ15858 1988 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 RGL2O15211 777 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 ONECUT3O60422 494 aaPredicted RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 KRT36O76013 467 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 DSG3P32926 999 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 LAMB3Q13751 1172 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 C1orf220Q5T0J3 134 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 PDIK1LQ8N165 341 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 MCPH1Q8NEM0 835 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 ZNF516Q92618 1163 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 OSBPL8Q9BZF1 889 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 NDE1Q9NXR1 346 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 ZMYND8Q9ULU4 1186 aaPredicted RBP13.29□□□□□ -0.28
RETREG3-201ENST00000309428 UBIAD1Q9Y5Z9 338 aa13.29□□□□□ -0.28
RETREG3-201ENST00000309428 CXCL8P10145 99 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ITIH2P19823 946 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 KPNB1Q14974 876 aaKnown RBP13.28□□□□□ -0.28
RETREG3-201ENST00000309428 BMT2Q1RMZ1 405 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 HSDL1Q3SXM5 330 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 BBOF1Q8ND07 529 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 NMD3Q96D46 503 aaKnown RBP13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ZNF570Q96NI8 536 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 FAM111AQ96PZ2 611 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ARAP2Q8WZ64 1704 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 BRCA2P51587 3418 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 STAM2O75886 525 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 CYP2C8P10632 490 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 CACNA2D1P54289 1103 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 OR6B2Q6IFH4 312 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ACAD10Q6JQN1 1059 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 C3orf62Q6ZUJ4 267 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 VSIG10LQ86VR7 867 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 NLRP7Q8WX94 980 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 LPAR1Q92633 364 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 SERPINB12Q96P63 405 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 TSSK1BQ9BXA7 367 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 SPDYE5A6NIY4 337 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 COPEO14579 308 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ATP5HO75947 161 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 CALB2P22676 271 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 YARSP54577 528 aaKnown RBP13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ARID3BQ8IVW6 561 aaPredicted RBP13.28□□□□□ -0.28
RETREG3-201ENST00000309428 BORCS6Q96GS4 357 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ATXN7L3BQ96GX2 97 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 RNPEPL1Q9HAU8 725 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 PDGFCQ9NRA1 345 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 SMYD2Q9NRG4 433 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 HES2Q9Y543 173 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 NR2E3Q9Y5X4 410 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 IVNS1ABPQ9Y6Y0 642 aa13.28□□□□□ -0.28
RETREG3-201ENST00000309428 ADRA1DP25100 572 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 SSTR1P30872 391 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 PSMC1P62191 440 aaKnown RBP13.27□□□□□ -0.28
RETREG3-201ENST00000309428 STAT4Q14765 748 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 FAM43BQ6ZT52 329 aaPredicted RBP13.27□□□□□ -0.28
RETREG3-201ENST00000309428 C4orf19Q8IY42 314 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 TMEM192Q8IY95 271 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 ACAP3Q96P50 834 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 NINJ2Q9NZG7 142 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 PACSIN3Q9UKS6 424 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 ZNF711Q9Y462 761 aa13.27□□□□□ -0.28
RETREG3-201ENST00000309428 STK10O94804 968 aaKnown RBP13.27□□□□□ -0.29
RETREG3-201ENST00000309428 GLRA2P23416 452 aa13.27□□□□□ -0.29
RETREG3-201ENST00000309428 SFNP31947 248 aa13.27□□□□□ -0.29
RETREG3-201ENST00000309428 PHKA2P46019 1235 aa13.27□□□□□ -0.29
RETREG3-201ENST00000309428 FASTKD3Q14CZ7 662 aaKnown RBP13.27□□□□□ -0.29
RETREG3-201ENST00000309428 MFSD7Q6UXD7 560 aa13.27□□□□□ -0.29
RETREG3-201ENST00000309428 ECHDC2Q86YB7 292 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms