RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 H2AFYO75367 372 aaKnown RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 PDK1Q15118 436 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 EFHC1Q5JVL4 640 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 ASIC4Q96FT7 647 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 SIKE1Q9BRV8 207 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 CAMSAP3Q9P1Y5 1249 aaPredicted RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 CNOT7Q9UIV1 285 aaKnown RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 A0A0A6YYK5 440 aaPredicted RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 SYNDIG1LA6NDD5 238 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 DDX5P17844 614 aaKnown RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 RPA1P27694 616 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 MLH1P40692 756 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 FOXR1Q6PIV2 292 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 CCDC81Q6ZN84 652 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 FBXO36Q8NEA4 188 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 GCNAQ96QF7 691 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 TMEM51Q9NW97 253 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 TMEM161AQ9NX61 479 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 DCDC2Q9UHG0 476 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 A0A0G2JLW4 131 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 SF3B3Q15393 1217 aaKnown RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 EFL1Q7Z2Z2 1120 aaKnown RBP18.06■□□□□ 0.48
SYNPO-201ENST00000307662 ATG4AQ8WYN0 398 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 MAML3Q96JK9 1138 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 SPON2Q9BUD6 331 aa18.06■□□□□ 0.48
SYNPO-201ENST00000307662 EEF2KO00418 725 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 GYS1P13807 737 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 STIP1P31948 543 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 IREB2P48200 963 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 KRR1Q13601 381 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 R3HDM1Q15032 1099 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 GPR162Q16538 588 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 KIZQ2M2Z5 673 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 TTI2Q6NXR4 508 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 TRIM69Q86WT6 500 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SP8Q8IXZ3 490 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 AFG1LQ8WV93 481 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 JPH1Q9HDC5 661 aaPredicted RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SYBUQ9NX95 663 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 LRCH1Q9Y2L9 728 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 GPD1P21695 349 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SERPINB5P36952 375 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 RFX5P48382 616 aaPredicted RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 RNF219Q5W0B1 726 aaPredicted RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 RNF149Q8NC42 400 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 KLHL25Q9H0H3 589 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 RIC8BQ9NVN3 520 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SLC39A10Q9ULF5 831 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 V9GYQ6 96 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 AQP5P55064 265 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 ATPAF2Q8N5M1 289 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SHCBP1Q8NEM2 672 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 ATXN2LQ8WWM7 1075 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 RBBP8Q99708 897 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 AGAP1Q9UPQ3 857 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 CAB39Q9Y376 341 aaPredicted RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SLC34A1Q06495 639 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 GPAT2Q6NUI2 795 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 TTC23LQ6PF05 361 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 ATP8B4Q8TF62 1192 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 AENQ8WTP8 325 aaKnown RBP18.05■□□□□ 0.48
SYNPO-201ENST00000307662 PPP1R2P1Q96PQ5 205 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 MED15Q96RN5 788 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 CPS1P31327 1500 aa18.05■□□□□ 0.48
SYNPO-201ENST00000307662 SUPT3HB4E1H0 165 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 TM9SF1O15321 606 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 WBP4O75554 376 aaKnown RBP18.04■□□□□ 0.48
SYNPO-201ENST00000307662 C1orf131Q8NDD1 294 aaKnown RBP18.04■□□□□ 0.48
SYNPO-201ENST00000307662 USP33Q8TEY7 942 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 ZFYVE19Q96K21 471 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 SNX13Q9Y5W8 968 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 TPST1O60507 370 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 ANO4Q32M45 955 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 ARHGAP22Q7Z5H3 698 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 SH3TC2Q8TF17 1288 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 OTULINQ96BN8 352 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 ZNF669Q96BR6 464 aaPredicted RBP18.04■□□□□ 0.48
SYNPO-201ENST00000307662 BBS2Q9BXC9 721 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 SLC24A2Q9UI40 661 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 C1orf167Q5SNV9 1468 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 RBP5P82980 135 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 EPC2Q52LR7 807 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 DAGLBQ8NCG7 672 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 PPP2R3CQ969Q6 453 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 APPL1Q9UKG1 709 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 LZTS3O60299 673 aaPredicted RBP18.04■□□□□ 0.48
SYNPO-201ENST00000307662 FDX1P10109 184 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 XKR3Q5GH77 459 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 IYDQ6PHW0 289 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 CASP10Q92851 521 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 ARHGAP20Q9P2F6 1191 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 C5orf58C9J3I9 102 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 CEP78Q5JTW2 689 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 TUBGCP3Q96CW5 907 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 PAFAH2Q99487 392 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 MPP6Q9NZW5 540 aa18.04■□□□□ 0.48
SYNPO-201ENST00000307662 MYL3P08590 195 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 GTF2H1P32780 548 aa18.03■□□□□ 0.48
SYNPO-201ENST00000307662 NFIXQ14938 502 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms