RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 CD44P16070 742 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 GRM5P41594 1212 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ROR1Q01973 937 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ARHGAP1Q07960 439 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 MKRN4PQ13434 485 aaPredicted RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 TUSC3Q13454 348 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 RNF187Q5TA31 235 aaPredicted RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 UHMK1Q8TAS1 419 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ACSF2Q96CM8 615 aaPredicted RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ERGIC2Q96RQ1 377 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 NXF3Q9H4D5 531 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 PYCARDQ9ULZ3 195 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 MRPS23Q9Y3D9 190 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 I3L4J1 428 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ZW10O43264 779 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 CLCN1P35523 988 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 DR1Q01658 176 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 EEF1DP3Q658K8 133 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 PPP2R2DQ66LE6 453 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 SIAH1Q8IUQ4 282 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 HERC6Q8IVU3 1022 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 VPS52Q8N1B4 723 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 TRIB2Q92519 343 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 SMYD2Q9NRG4 433 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ATXN8OSP0DMR3 200 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 EPHB2P29323 1055 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 WEE1P30291 646 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 ZC3H18Q86VM9 953 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 MMTAG2Q9BU76 263 aaKnown RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 APOL5Q9BWW9 433 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 SUDS3Q9H7L9 328 aaPredicted RBP9.72□□□□□ -0.85
PTPRE-202ENST00000306042 SMPD4Q9NXE4 827 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 GTF2IRD1Q9UHL9 959 aa9.72□□□□□ -0.85
PTPRE-202ENST00000306042 TISP43B9A030 160 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 TRIM66O15016 1216 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 RGS16O15492 202 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 GLUD1P00367 558 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 GSTA1P08263 222 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 GSTA2P09210 222 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ZNF211Q13398 564 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 WSCD1Q658N2 575 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 C17orf99Q6UX52 265 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 MYLK4Q86YV6 388 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ARNTL2Q8WYA1 636 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 VPS39Q96JC1 886 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 GDAP1L1Q96MZ0 367 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ASAH2Q9NR71 780 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ITIH6Q6UXX5 1313 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 IGLV3-22A0A075B6J6 115 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 A0A1W2PQ45 241 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 A0A1W2PQY0 241 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 EIF4E1BA6NMX2 242 aaKnown RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 DNM1LO00429 736 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 RNASEH1O60930 286 aaKnown RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 NFICP08651 508 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ATXN3P54252 364 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 CDR2Q01850 454 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 CPLX4Q7Z7G2 160 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ZBED3Q96IU2 234 aaPredicted RBP9.71□□□□□ -0.85
PTPRE-202ENST00000306042 CIPCQ9C0C6 399 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 ZNF518BQ9C0D4 1074 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 C2CD2Q9Y426 696 aa9.71□□□□□ -0.85
PTPRE-202ENST00000306042 NUP188Q5SRE5 1749 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 F5H423 210 aaPredicted RBP9.71□□□□□ -0.86
PTPRE-202ENST00000306042 POC1B-GALNT4F8VUJ3 575 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 BDNFP23560 247 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 GLUD2P49448 558 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 ARID5BQ14865 1188 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 NR1I3Q14994 352 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 IQCB1Q15051 598 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 NPAS4Q8IUM7 802 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 SMC6Q96SB8 1091 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 OLA1Q9NTK5 396 aaKnown RBP9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TLK1Q9UKI8 766 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TSPAN16Q9UKR8 245 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 ZNF536O15090 1300 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 A0A087X0B3 334 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 CCDC188H7C350 402 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TM4SF4P48230 202 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TWF1Q12792 350 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 COL9A3Q14050 684 aaPredicted RBP9.71□□□□□ -0.86
PTPRE-202ENST00000306042 ARHGEF7Q14155 803 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TRIM60Q495X7 471 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 ZNF697Q5TEC3 545 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 C6orf163Q5TEZ5 329 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 CST9Q5W186 159 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 UNC45BQ8IWX7 931 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 SLC35G2Q8TBE7 412 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 FEZF2Q8TBJ5 459 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 SLC2A14Q8TDB8 520 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 ATP6V1E2Q96A05 226 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 CORO1BQ9BR76 489 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TRIM56Q9BRZ2 755 aaKnown RBP9.71□□□□□ -0.86
PTPRE-202ENST00000306042 TTPALQ9BTX7 342 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 BFARQ9NZS9 450 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 PLA2G4CQ9UP65 541 aa9.71□□□□□ -0.86
PTPRE-202ENST00000306042 SYNCRIPO60506 623 aaKnown RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 ASMTLO95671 621 aa9.7□□□□□ -0.86
PTPRE-202ENST00000306042 PNMA6AP0CW24 399 aaPredicted RBP9.7□□□□□ -0.86
PTPRE-202ENST00000306042 KLK7P49862 253 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms