RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 CDV3Q9UKY7 258 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 PLA2G4CQ9UP65 541 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 HECW2Q9P2P5 1572 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ACOX1Q15067 660 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 RINLQ6ZS11 566 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 MTG1Q9BT17 334 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SPATA16Q9BXB7 569 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SPATC1LQ9H0A9 340 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ING2Q9H160 280 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 HES2Q9Y543 173 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 A2ML1A8K2U0 1454 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 RNASEH1O60930 286 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 MT-CO1P00395 513 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 STMN1P16949 149 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 GALNTL6Q49A17 601 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 C1orf146Q5VVC0 180 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 OTOP2Q7RTS6 562 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 FAM131BQ86XD5 332 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 CBWD2Q8IUF1 395 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TBC1D19Q8N5T2 526 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 EHD2Q9NZN4 543 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 APEX2Q9UBZ4 518 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 WNT10BO00744 389 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 CCDC130P13994 396 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 INSRRP14616 1297 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 RPS12P25398 132 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 GGCXP38435 758 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ATP2C1P98194 919 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 AGBL3Q8NEM8 1001 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 CHCHD3Q9NX63 227 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SPATA31E1Q6ZUB1 1445 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ZNF609O15014 1411 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 CCDC159P0C7I6 412 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 FMO5P49326 533 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 CCDC144BQ3MJ40 725 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 C6orf118Q5T5N4 469 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 NRKQ7Z2Y5 1582 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 EXD1Q8NHP7 514 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ASCC2Q9H1I8 757 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ZSCAN32Q9NX65 697 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TRPM5Q9NZQ8 1165 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 A0A1B0GUA9 196 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 H7C4K7 107 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 KATNA1O75449 491 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SCNN1BP51168 640 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 GALCP54803 685 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 MDM2Q00987 491 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TBL3Q12788 808 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TAF11Q15544 211 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 PDCD2Q16342 344 aaPredicted RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TRPM4Q8TD43 1214 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SEMA4DQ92854 862 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 ADAM2Q99965 735 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 KDM4CQ9H3R0 1056 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 STAU2Q9NUL3 570 aaKnown RBP eCLIP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 MSRAQ9UJ68 235 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 EXTL3O43909 919 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 MARSP56192 900 aaKnown RBP8.14□□□□□ -1.11
SCN9A-201ENST00000303354 BARGINQ6ZT62 677 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 INPP5DQ92835 1189 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 SNF8Q96H20 258 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 TRIM62Q9BVG3 475 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 NT5MQ9NPB1 228 aa8.14□□□□□ -1.11
SCN9A-201ENST00000303354 PDZK1P1A8MUH7 402 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CST8O60676 142 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 HIBCHQ6NVY1 386 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 GET4Q7L5D6 327 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 PCSK9Q8NBP7 692 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 COG1Q8WTW3 980 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 ZFP42Q96MM3 310 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 EFHD1Q9BUP0 239 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TBC1D3BA6NDS4 549 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 H3BRB1 525 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TLL1O43897 1013 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 KRT38O76015 456 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SRP72O76094 671 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 ICAM1P05362 532 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 NCALDP61601 193 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 FMR1NBQ8N0W7 255 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CAMKK1Q8N5S9 505 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CYP2W1Q8TAV3 490 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 ZBTB45Q96K62 511 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TRIM45Q9H8W5 580 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 WWOXQ9NZC7 414 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SRGNP10124 158 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 RHOAP61586 193 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CD99L2Q8TCZ2 262 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 RNF31Q96EP0 1072 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TRIM15Q9C019 465 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 IARS2Q9NSE4 1012 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 TBX20Q9UMR3 447 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 RUVBL2Q9Y230 463 aaKnown RBP8.13□□□□□ -1.11
SCN9A-201ENST00000303354 SNX8Q9Y5X2 465 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 PCSK1P29120 753 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 GCKP35557 465 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 CASP8Q14790 479 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 LVRNQ6Q4G3 990 aa8.13□□□□□ -1.11
SCN9A-201ENST00000303354 C10orf88Q9H8K7 445 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms