RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 LIG4P49917 911 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 TMEM132AQ24JP5 1023 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 PPM1JQ5JR12 505 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 TANGO2Q6ICL3 276 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 USP37Q86T82 979 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 BICD1Q96G01 975 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 KIFC3Q9BVG8 833 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 MRPL4Q9BYD3 311 aaKnown RBP22.61■■□□□ 1.21
SMCO4-201ENST00000298966 CCDC113Q9H0I3 377 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 BRD9Q9H8M2 597 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 SNTG2Q9NY99 539 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.61■■□□□ 1.21
SMCO4-201ENST00000298966 CDY1Q9Y6F8 540 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 STYXL1Q9Y6J8 313 aa22.61■■□□□ 1.21
SMCO4-201ENST00000298966 SLC30A4O14863 429 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 CLIC2O15247 247 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 EXOC3O60645 756 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 LRP3O75074 770 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 LDHAP00338 332 aaKnown RBP22.6■■□□□ 1.21
SMCO4-201ENST00000298966 FGFR3P22607 806 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 MCCD1P59942 119 aaPredicted RBP22.6■■□□□ 1.21
SMCO4-201ENST00000298966 UBXN1Q04323 297 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 FAM187BQ17R55 369 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 CEP135Q66GS9 1140 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 INTS8Q75QN2 995 aaKnown RBP22.6■■□□□ 1.21
SMCO4-201ENST00000298966 ZSCAN30Q86W11 494 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 FAM186BQ8IYM0 893 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 CCDC150Q8NCX0 1101 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 ERGIC2Q96RQ1 377 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 NDST4Q9H3R1 872 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 AVENQ9NQS1 362 aaPredicted RBP22.6■■□□□ 1.21
SMCO4-201ENST00000298966 ZKSCAN5Q9Y2L8 839 aa22.6■■□□□ 1.21
SMCO4-201ENST00000298966 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.6■■□□□ 1.21
SMCO4-201ENST00000298966 CNOT1A5YKK6 2376 aaKnown RBP22.59■■□□□ 1.21
SMCO4-201ENST00000298966 AKAP3O75969 853 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 RECQL4O94761 1208 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 RETP07949 1114 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 TPM1P09493 284 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 TDGF1P13385 188 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 CEBPBP17676 345 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 PTPN2P17706 415 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 CCR3P51677 355 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 SLC5A9Q2M3M2 681 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 MIIPQ5JXC2 388 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 MAMSTRQ6ZN01 415 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 PRR23BQ6ZRT6 265 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 TAS1R3Q7RTX0 852 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 NUP58Q9BVL2 599 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 HSPBP1Q9NZL4 362 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 BACE2Q9Y5Z0 518 aa22.59■■□□□ 1.21
SMCO4-201ENST00000298966 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.58■■□□□ 1.21
SMCO4-201ENST00000298966 SHISA7A6NL88 538 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 ACKR2O00590 384 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 LRG1P02750 347 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 KRT13P13646 458 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 TBX2Q13207 712 aaPredicted RBP22.58■■□□□ 1.21
SMCO4-201ENST00000298966 GRM2Q14416 872 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 NAB2Q15742 525 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 ADPGKQ9BRR6 497 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 FZD8Q9H461 694 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 ZFP14Q9HCL3 533 aa22.58■■□□□ 1.21
SMCO4-201ENST00000298966 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP22.58■■□□□ 1.21
SMCO4-201ENST00000298966 TMEM189-UBE2V1I3L0A0 370 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 PES1O00541 588 aaKnown RBP22.57■■□□□ 1.2
SMCO4-201ENST00000298966 NRDCO43847 1150 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 B3GAT3O94766 335 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 PRKCBP05771 671 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 ELF1P32519 619 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 CYP2J2P51589 502 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 ANKS3Q6ZW76 656 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 ZNF687Q8N1G0 1237 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 POMGNT1Q8WZA1 660 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 IRF7Q92985 503 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 EEF2KMTQ96G04 330 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 TRMT61BQ9BVS5 477 aaKnown RBP22.57■■□□□ 1.2
SMCO4-201ENST00000298966 PDZD7Q9H5P4 517 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 LMAN1LQ9HAT1 526 aa22.57■■□□□ 1.2
SMCO4-201ENST00000298966 GTPBP10A4D1E9 387 aaKnown RBP22.56■■□□□ 1.2
SMCO4-201ENST00000298966 ZNF197O14709 1029 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 TEX33O43247 280 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 TRAPPC3O43617 180 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 STX10O60499 249 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 TOM1L1O75674 476 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 AFPP02771 609 aaKnown RBP22.56■■□□□ 1.2
SMCO4-201ENST00000298966 PRPF4BQ13523 1007 aaKnown RBP22.56■■□□□ 1.2
SMCO4-201ENST00000298966 FIGNQ5HY92 759 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 GPD1LQ8N335 351 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 FAM3CQ92520 227 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 CBWD1Q9BRT8 395 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 CXCL16Q9H2A7 254 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 SEMA4GQ9NTN9 838 aa22.56■■□□□ 1.2
SMCO4-201ENST00000298966 TICRRQ7Z2Z1 1910 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 ARHGEF37A1IGU5 675 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 ESPNB1AK53 854 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 PRRG1O14668 218 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 FCARP24071 287 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 TKTP29401 623 aaKnown RBP22.55■■□□□ 1.2
SMCO4-201ENST00000298966 CXCL12P48061 93 aa22.55■■□□□ 1.2
SMCO4-201ENST00000298966 SIM2Q14190 667 aaPredicted RBP22.55■■□□□ 1.2
SMCO4-201ENST00000298966 POTEHQ6S545 545 aa22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms