RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 DPP9Q86TI2 863 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 LRRN4CLQ8ND94 238 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 ADGRA3Q8IWK6 1321 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 CACNA1CQ13936 2221 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 M0QYV0 167 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 UBXN8O00124 270 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 ZNF189O75820 626 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 ITIH2P19823 946 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 HMOX2P30519 316 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 ZCWPW2Q504Y3 356 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 HHIPL2Q6UWX4 724 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 LRRC31Q6UY01 552 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 DIS3LQ8TF46 1054 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 FAM213AQ9BRX8 229 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 PCSK1NQ9UHG2 260 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 SCN11AQ9UI33 1791 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 LAMC2Q13753 1193 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 LONRF1Q17RB8 773 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 MOXD1Q6UVY6 613 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 HAUS6Q7Z4H7 955 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 NSL1Q96IY1 281 aa10.28□□□□□ -0.76
COL6A3-201ENST00000295550 H2AFY2Q9P0M6 372 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 MYH14Q7Z406 1995 aaKnown RBP10.28□□□□□ -0.76
COL6A3-201ENST00000295550 HNRNPH1P31943 449 aaKnown RBP10.27□□□□□ -0.76
COL6A3-201ENST00000295550 SOX11P35716 441 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 GRB10Q13322 594 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 EPHA7Q15375 998 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 AFG1LQ8WV93 481 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 RSPH1Q8WYR4 309 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 LRRC39Q96DD0 335 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 ROPN1BQ9BZX4 212 aaPredicted RBP10.27□□□□□ -0.76
COL6A3-201ENST00000295550 ROPN1Q9HAT0 212 aaPredicted RBP10.27□□□□□ -0.76
COL6A3-201ENST00000295550 SLC37A4O43826 429 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 CDH16O75309 829 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 MYBP10242 640 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 IFNEQ86WN2 208 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 TADA1Q96BN2 335 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 LAMB4A4D0S4 1761 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 MAGEA13PA6NCF6 341 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 TRIM24O15164 1050 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 FNTAP49354 379 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 COPAP53621 1224 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 TNFAIP2Q03169 654 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 ADGRA1Q86SQ6 560 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 NSUN6Q8TEA1 469 aaKnown RBP10.27□□□□□ -0.76
COL6A3-201ENST00000295550 CRAMP1Q96RY5 1269 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 EPS8L2Q9H6S3 715 aa10.27□□□□□ -0.76
COL6A3-201ENST00000295550 SPATA31A1Q5TZJ5 1347 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 LINC00854A0A1B0GVQ3 168 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 NMT1P30419 496 aaKnown RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 LRRC74AQ0VAA2 488 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 EAPPQ56P03 285 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RCOR2Q8IZ40 523 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 JMJD4Q9H9V9 463 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CLCA2Q9UQC9 943 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 ADGRA2Q96PE1 1338 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 GPR75-ASB3A0A0A6YYF3 556 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 UBA6A0AVT1 1052 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 TLR2O60603 784 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CDH6P55285 790 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 PRUNE1Q86TP1 453 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 LINC00116Q8NCU8 138 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 ACTRT1Q8TDG2 376 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 ERP44Q9BS26 406 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 MRC1P22897 1456 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 EFHC2Q5JST6 749 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RSBN1Q5VWQ0 802 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 C11orf88Q6PI97 169 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CYFIP1Q7L576 1253 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 KIRREL3Q8IZU9 778 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CATSPER2Q96P56 530 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CENPCQ03188 943 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 SNRNP35Q16560 246 aaKnown RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 TBC1D16Q8TBP0 767 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 ZFYVE1Q9HBF4 777 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 ZNF302Q9NR11 478 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 SPATA2Q9UM82 520 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 A0A0A6YYK5 440 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 PSMC3P17980 439 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 PWP1Q13610 501 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 C19orf18Q8NEA5 215 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RIN2Q8WYP3 895 aaPredicted RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 SGSM3Q96HU1 749 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 WNK4Q96J92 1243 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 SENP7Q9BQF6 1050 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 CLDN3O15551 220 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 KCNN4O15554 427 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RAD17O75943 681 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 FKBP9O95302 570 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 NDUFA5Q16718 116 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 FKBP9P1Q75LS8 142 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 MIGA2Q7L4E1 593 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 OR6B3Q8NGW1 331 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 AENQ8WTP8 325 aaKnown RBP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RBM15Q96T37 977 aaKnown RBP eCLIP10.27□□□□□ -0.77
COL6A3-201ENST00000295550 KLHL4Q9C0H6 718 aa10.27□□□□□ -0.77
COL6A3-201ENST00000295550 RPA1P27694 616 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 PPP4CP60510 307 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 NCF4Q15080 339 aa10.26□□□□□ -0.77
COL6A3-201ENST00000295550 COBLL1Q53SF7 1204 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms