RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 GPR141Q7Z602 305 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 GJD4Q96KN9 370 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 KCTD10Q9H3F6 313 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 POLR1AO95602 1720 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 GYPCP04921 128 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 PAX7P23759 505 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 MAPK10P53779 464 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 MAPK11Q15759 364 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 ANKRD7Q92527 254 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 USP13Q92995 863 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 PHF20Q9BVI0 1012 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 NSMCE4AQ9NXX6 385 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 STRNO43815 780 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 CDH2P19022 906 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 LAMC2Q13753 1193 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 FAM117BQ6P1L5 589 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 CYB5D1Q6P9G0 228 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 ALBP02768 609 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 PGK2P07205 417 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 CHI3L1P36222 383 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 COILP38432 576 aaPredicted RBP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 NAB2Q15742 525 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 GPAT2Q6NUI2 795 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 CHMP1BQ7LBR1 199 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 CYP4F12Q9HCS2 524 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.78■□□□□ 0.28
SSRP1-202ENST00000293880 RNF181Q9P0P0 153 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 SEPT3Q9UH03 358 aa16.78■□□□□ 0.28
SSRP1-202ENST00000293880 IRAK1P51617 712 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 C16orf72Q14CZ0 275 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 RTKN2Q8IZC4 609 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 CENPLQ8N0S6 344 aaPredicted RBP16.77■□□□□ 0.28
SSRP1-202ENST00000293880 USP38Q8NB14 1042 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 JADE3Q92613 823 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 RUBCNQ92622 972 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 GINS4Q9BRT9 223 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 OSBPL8Q9BZF1 889 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 THAP2Q9H0W7 228 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 HEY2Q9UBP5 337 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 ZNF23P17027 643 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 RAP1GAPP47736 663 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 BFSP2Q13515 415 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 PCYOX1LQ8NBM8 494 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 ACAD9Q9H845 621 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 ELP3Q9H9T3 547 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 TUFT1Q9NNX1 390 aa16.77■□□□□ 0.28
SSRP1-202ENST00000293880 KCNQ2O43526 872 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 MLNP12872 115 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 COPAP53621 1224 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 HMGCS2P54868 508 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 OTUD4Q01804 1114 aaKnown RBP16.77■□□□□ 0.27
SSRP1-202ENST00000293880 ARHGEF6Q15052 776 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 REXO1L1PQ8IX06 675 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 L3MBTL3Q96JM7 780 aaPredicted RBP16.77■□□□□ 0.27
SSRP1-202ENST00000293880 PDXKO00764 312 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 FOXO4P98177 505 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 WLSQ5T9L3 541 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 ZNF560Q96MR9 790 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 TRIM9Q9C026 710 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 FAM153AQ9UHL3 310 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 CLASP2O75122 1294 aaKnown RBP16.77■□□□□ 0.27
SSRP1-202ENST00000293880 SNUPNO95149 360 aaKnown RBP16.77■□□□□ 0.27
SSRP1-202ENST00000293880 STK4Q13043 487 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 P3H2Q8IVL5 708 aa16.77■□□□□ 0.27
SSRP1-202ENST00000293880 MRPL42Q9Y6G3 142 aaKnown RBP16.77■□□□□ 0.27
SSRP1-202ENST00000293880 POLBP06746 335 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 RPS7P62081 194 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 SKIV2LQ15477 1246 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 ARID3BQ8IVW6 561 aaPredicted RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 ADSSL1Q8N142 457 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 FOPNLQ96NB1 174 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 SNX13Q9Y5W8 968 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 COL15A1P39059 1388 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 CST8O60676 142 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 TADA2AO75478 443 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 HSMCR30P0CW71 290 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 ELMSAN1Q6PJG2 1045 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 ELMO3Q96BJ8 720 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 MAGED4Q96JG8 741 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 ECSITQ9BQ95 431 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 THUMPD3Q9BV44 507 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 VIPAS39Q9H9C1 493 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 MAP3K20Q9NYL2 800 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 PCDHA10Q9Y5I2 948 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 MAP3K4Q9Y6R4 1608 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 NQO1P15559 274 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 GPD1P21695 349 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 PDLIM2Q96JY6 352 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 CDC42BPGQ6DT37 1551 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 SPTLC1O15269 473 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 SNRPAP09012 282 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 SERPINB9P50453 376 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 CDC16Q13042 620 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 R3HDM1Q15032 1099 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 TRIM71Q2Q1W2 868 aaKnown RBP16.76■□□□□ 0.27
SSRP1-202ENST00000293880 LAMC1P11047 1609 aa16.76■□□□□ 0.27
SSRP1-202ENST00000293880 CDH16O75309 829 aa16.75■□□□□ 0.27
SSRP1-202ENST00000293880 NPM3O75607 178 aaKnown RBP16.75■□□□□ 0.27
SSRP1-202ENST00000293880 PIGHQ14442 188 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms