RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 GAS6Q14393 721 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 STK38Q15208 465 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 NFE2Q16621 373 aaPredicted RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 RSPO4Q2I0M5 234 aaPredicted RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 LMBRD2Q68DH5 695 aaPredicted RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 CCDC65Q8IXS2 484 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 CMTM8Q8IZV2 173 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 SPEM1Q8N4L4 309 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 GPR161Q8N6U8 529 aaKnown RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 CELF5Q8N6W0 485 aaKnown RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 FAM84AQ96KN4 292 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 LRRC3BQ96PB8 259 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 MTMR12Q9C0I1 747 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 TMLHEQ9NVH6 421 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 DDX43Q9NXZ2 648 aaKnown RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 ITGA11Q9UKX5 1188 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 R3HCC1Q9Y3T6 440 aaKnown RBP13.73□□□□□ -0.21
CD44-203ENST00000278386 KIAA1549LQ6ZVL6 1849 aa13.73□□□□□ -0.21
CD44-203ENST00000278386 SPAG17Q6Q759 2223 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 FRMD3A2A2Y4 597 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 PRPF6O94906 941 aaKnown RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 CSH1P0DML2 217 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 CSH2P0DML3 217 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 DDX6P26196 483 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD44-203ENST00000278386 NLRP12P59046 1061 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 ITPRIPL2Q3MIP1 535 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 INTS6LQ5JSJ4 861 aaKnown RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 DGKKQ5KSL6 1271 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 SDHAF4Q5VUM1 108 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 HEATR6Q6AI08 1181 aaKnown RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 STXBP4Q6ZWJ1 553 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 ADGRF2Q8IZF7 708 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 GPD1LQ8N335 351 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 CSGALNACT2Q8N6G5 542 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 LRRC52Q8N7C0 313 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 MAB21L3Q8N8X9 362 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 TTC16Q8NEE8 873 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 MRPS31Q92665 395 aaKnown RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 ANKRD36BP1Q96IX9 119 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 ZSCAN16Q9H4T2 348 aaPredicted RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 TMEM206Q9H813 350 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 PDE11AQ9HCR9 933 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 ZMYM5Q9UJ78 669 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 CDV3Q9UKY7 258 aaKnown RBP13.72□□□□□ -0.21
CD44-203ENST00000278386 MTMR6Q9Y217 621 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 SNX9Q9Y5X1 595 aa13.72□□□□□ -0.21
CD44-203ENST00000278386 CACNA1AO00555 2505 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 EML5Q05BV3 1969 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 MED19A0JLT2 244 aaPredicted RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 CHURC1-FNTBB4DL54 471 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 STX6O43752 255 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 WEE1P30291 646 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 FNTBP49356 437 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 RPL10AP62906 217 aaKnown RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 LMNB2Q03252 620 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 SLC39A14Q15043 492 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 LAIR1Q6GTX8 287 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 MAMSTRQ6ZN01 415 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 TMEM86AQ8N2M4 240 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 LEO1Q8WVC0 666 aaPredicted RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 INTS4Q96HW7 963 aaKnown RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 SLC46A2Q9BY10 475 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 KIF9Q9HAQ2 790 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 TRPC7Q9HCX4 862 aa13.71□□□□□ -0.21
CD44-203ENST00000278386 UXTQ9UBK9 157 aaPredicted RBP13.71□□□□□ -0.21
CD44-203ENST00000278386 TNNC2P02585 160 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 F11P03951 625 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 HMGA1P17096 107 aaKnown RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 SDHBP21912 280 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 CYP2F1P24903 491 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 PCSK1P29120 753 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 ASIC1P78348 528 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 RBP5P82980 135 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 DMWDQ09019 674 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 SPEM2Q0P670 501 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 MYO1EQ12965 1108 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 SIM2Q14190 667 aaPredicted RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 DDR2Q16832 855 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 CCDC142Q17RM4 750 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 WDR44Q5JSH3 913 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 TXNDC8Q6A555 127 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 TRIM68Q6AZZ1 485 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 CC2D1AQ6P1N0 951 aaPredicted RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 TMEM150AQ86TG1 271 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 OSTM1Q86WC4 334 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 SPATA2LQ8IUW3 424 aaPredicted RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 SCN4BQ8IWT1 228 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 USP13Q92995 863 aaPredicted RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 ACBD6Q9BR61 282 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 TNMDQ9H2S6 317 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 GKN1Q9NS71 199 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 DLL3Q9NYJ7 618 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 CCL26Q9Y258 94 aa13.7□□□□□ -0.22
CD44-203ENST00000278386 MORC2Q9Y6X9 1032 aaPredicted RBP13.7□□□□□ -0.22
CD44-203ENST00000278386 PRR5-ARHGAP8B1AHC4 643 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 K7ELQ4 463 aaPredicted RBP13.69□□□□□ -0.22
CD44-203ENST00000278386 KIAA0391O15091 583 aaKnown RBP13.69□□□□□ -0.22
CD44-203ENST00000278386 HCRTO43612 131 aa13.69□□□□□ -0.22
CD44-203ENST00000278386 TADA3O75528 432 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms