RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 PRPF4O43172 522 aaKnown RBP eCLIP8.18□□□□□ -1.1
USP3-201ENST00000268049 TBC1D12O60347 775 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 RPN1P04843 607 aaKnown RBP8.18□□□□□ -1.1
USP3-201ENST00000268049 HIST1H2AGP0C0S8 130 aaPredicted RBP8.18□□□□□ -1.1
USP3-201ENST00000268049 SLFN14P0C7P3 912 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 SLC2A4P14672 509 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 HIST1H2ADP20671 130 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 KCNA3P22001 575 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 RHBDL3P58872 404 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 EXOSC10Q01780 885 aaKnown RBP8.18□□□□□ -1.1
USP3-201ENST00000268049 ITGA7Q13683 1181 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 SLC39A14Q15043 492 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 PRR23CQ6ZRP0 262 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 ANO5Q75V66 913 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 RABEPKQ7Z6M1 372 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 TFB1MQ8WVM0 346 aaKnown RBP8.18□□□□□ -1.1
USP3-201ENST00000268049 HIST1H2AHQ96KK5 128 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 CLIC6Q96NY7 704 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 COQ7Q99807 217 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 HIST1H2AJQ99878 128 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 MXRA8Q9BRK3 442 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 H2AFJQ9BTM1 129 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 ANKEF1Q9NU02 776 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 RNF186Q9NXI6 227 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 NDE1Q9NXR1 346 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 STRCP1A6NGW2 1772 aa8.18□□□□□ -1.1
USP3-201ENST00000268049 NRCAMQ92823 1304 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 GOLGA8JA6NMD2 632 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 KCNJ18B7U540 433 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SLC16A4O15374 487 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 KLHL41O60662 606 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 FAM200BP0CF97 657 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 PYGMP11217 842 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 RPS6P62753 249 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 AP2B1P63010 937 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 PTPN11Q06124 597 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 KCNJ12Q14500 433 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 BEND6Q5SZJ8 279 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 FAM171A1Q5VUB5 890 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SYT2Q8N9I0 419 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 ENOX1Q8TC92 643 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 FAM213AQ9BRX8 229 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 NUP85Q9BW27 656 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 TRAIPQ9BWF2 469 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 TMEM60Q9H2L4 133 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 FBXO44Q9H4M3 255 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 CAPN11Q9UMQ6 739 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 INSL6Q9Y581 213 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SNX9Q9Y5X1 595 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 PLCH1Q4KWH8 1693 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 UMODL1Q5DID0 1318 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 LRRIQ3A6PVS8 624 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 GOLGA8MH3BSY2 632 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 RASGRF2O14827 1237 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SEPT4O43236 478 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 DEAF1O75398 565 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 PDE5AO76074 875 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 LARGE1O95461 756 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 PFKFB1P16118 471 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 YBX3P16989 372 aaKnown RBP eCLIP8.17□□□□□ -1.13e-6■■■□□ 16.3
USP3-201ENST00000268049 POLR2EP19388 210 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 CMA1P23946 247 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 HDAC4P56524 1084 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 MRPS6P82932 125 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 TCP11X2Q5H9J9 407 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 GET4Q7L5D6 327 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 PHACTR4Q8IZ21 702 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 B4GALNT2Q8NHY0 566 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ATOH1Q92858 354 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 GPR88Q9GZN0 384 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 NGRNQ9NPE2 291 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 RNF14Q9UBS8 474 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 TRAF3IP3Q9Y228 551 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 CLIC2O15247 247 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 IFNB1P01574 187 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ATF2P15336 505 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 HTR1BP28222 390 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 KRT20P35900 424 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 MAPK9P45984 424 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ARL6IP4Q66PJ3 421 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 CCDC80Q76M96 950 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 C11orf74Q86VG3 221 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SLC20A1Q8WUM9 679 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ANKRD7Q92527 254 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ZCCHC2Q9C0B9 1178 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 SYNPO2Q9UMS6 1093 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 EDARQ9UNE0 448 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SLC45A1Q9Y2W3 748 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 NWD2Q9ULI1 1742 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 TLR2O60603 784 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 PPP6R2O75170 966 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 NFATC1O95644 943 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ASS1P00966 412 aaKnown RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 KELP23276 732 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 SERPINB4P48594 390 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 ZNF280AP59817 542 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 IL1RL1Q01638 556 aa8.17□□□□□ -1.1
USP3-201ENST00000268049 YWHAHQ04917 246 aaPredicted RBP8.17□□□□□ -1.1
USP3-201ENST00000268049 ARID5BQ14865 1188 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms