RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 C2orf71A6NGG8 1288 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 ASMTLO95671 621 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 OAS1P00973 400 aaKnown RBP13.29□□□□□ -0.28
LIG1-201ENST00000263274 YY1P25490 414 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 RAP1GAPP47736 663 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 PSMD6Q15008 389 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 GNPTABQ3T906 1256 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 EAPPQ56P03 285 aaPredicted RBP13.29□□□□□ -0.28
LIG1-201ENST00000263274 TRIM72Q6ZMU5 477 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 VSIG10LQ86VR7 867 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 TTLL6Q8N841 843 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 TCP10LQ8TDR4 215 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 CFAP36Q96G28 342 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 TTC25Q96NG3 672 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 SH3GL3Q99963 347 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 TJP2Q9UDY2 1190 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 THSD7AQ9UPZ6 1657 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 F5H423 210 aaPredicted RBP13.29□□□□□ -0.28
LIG1-201ENST00000263274 EGFRP00533 1210 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 KITP10721 976 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 PHBP35232 272 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 ARL4CP56559 192 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 RIPK1Q13546 671 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 FAXCQ5TGI0 409 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 RNF43Q68DV7 783 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 CEP128Q6ZU80 1094 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 SAMD7Q7Z3H4 446 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 LRRC6Q86X45 466 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 FBXL18Q96ME1 805 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 ZNF302Q9NR11 478 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 GRID1Q9ULK0 1009 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 H7C0C1 242 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 VWA5AO00534 786 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 GRAP2O75791 330 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 KRT3P12035 628 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 KLRC2P26717 231 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 ATP5OP48047 213 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 RASSF2P50749 326 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 GDF10P55107 478 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 CDH8P55286 799 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 PSMC1P62191 440 aaKnown RBP13.29□□□□□ -0.28
LIG1-201ENST00000263274 OGDHQ02218 1023 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 MUM1Q2TAK8 710 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 XKR3Q5GH77 459 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 TFDP3Q5H9I0 405 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 WDR78Q5VTH9 848 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 OTOAQ7RTW8 1153 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 PDIK1LQ8N165 341 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 LRRC71Q8N4P6 559 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 FLAD1Q8NFF5 587 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 ZNF570Q96NI8 536 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 PAFAH2Q99487 392 aa13.29□□□□□ -0.28
LIG1-201ENST00000263274 METTL5Q9NRN9 209 aaKnown RBP13.29□□□□□ -0.28
LIG1-201ENST00000263274 CCDC195A0A1B0GUA6 201 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 ZC3H11AO75152 810 aaKnown RBP eCLIP13.28□□□□□ -0.282e-8■■■■□ 25.1
LIG1-201ENST00000263274 RFC1P35251 1148 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 VCPP55072 806 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 NR1H3Q13133 447 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 RBBP5Q15291 538 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 ARMC3Q5W041 872 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 PLEKHA7Q6IQ23 1121 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 DARS2Q6PI48 645 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 BZW1Q7L1Q6 419 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 TMEM130Q8N3G9 435 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 CCDC33Q8N5R6 958 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 LPAR1Q92633 364 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 CISHQ9NSE2 258 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 SLC17A7Q9P2U7 560 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 HEY2Q9UBP5 337 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 LGALS13Q9UHV8 139 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 ZMYND8Q9ULU4 1186 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 TTLL13PA6NNM8 815 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 CSDE1O75534 798 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 CALB1P05937 261 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 INHBAP08476 426 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 GLRA2P23416 452 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 TBXAS1P24557 533 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 GEMIN4P57678 1058 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 CXCL9Q07325 125 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 RCN2Q14257 317 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 ALLCQ8N6M5 410 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 SPDYE1Q8NFV5 336 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 JDP2Q8WYK2 163 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 L3MBTL3Q96JM7 780 aaPredicted RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 FAM111AQ96PZ2 611 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 SLC13A1Q9BZW2 595 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 HAPLN2Q9GZV7 340 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 EBF2Q9HAK2 575 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 PICK1Q9NRD5 415 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 PRKAG3Q9UGI9 489 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 XPO7Q9UIA9 1087 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 SYNPO2Q9UMS6 1093 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 SMG5Q9UPR3 1016 aaKnown RBP13.28□□□□□ -0.28
LIG1-201ENST00000263274 TAF1LQ8IZX4 1826 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 TTC36A6NLP5 189 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 INO80B-WBP1J3KQ70 363 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 PMM2O15305 246 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 LPXNO60711 386 aa13.28□□□□□ -0.28
LIG1-201ENST00000263274 CD48P09326 243 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms