RNA–Protein interactions for RNA: ENST00000261889.9

SNX1-201, Transcript of sorting nexin 1, humanhuman

TSL 2 BASIC

Gene SNX1, Length 3,373 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-201ENST00000261889 SERPINB4P48594 390 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ALDH18A1P54886 795 aaKnown RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 DMP1Q13316 513 aaPredicted RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 KLF1Q13351 362 aaPredicted RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 CDO1Q16878 200 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 TKFCQ3LXA3 575 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 DALRD3Q5D0E6 543 aaKnown RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 SWSAP1Q6NVH7 229 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 SERAC1Q96JX3 654 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 SYT17Q9BSW7 474 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 TMEM120AQ9BXJ8 343 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ZNF341Q9BYN7 854 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 TMEM206Q9H813 350 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 RNF19AQ9NV58 838 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 AK5Q9Y6K8 562 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ZNF541Q9H0D2 1346 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 LRRIQ4A6NIV6 560 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 DHX15O43143 795 aaKnown RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 PROSCO94903 275 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 VIL1P09327 827 aaKnown RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 PYGBP11216 843 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 KLRC2P26717 231 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ZNF252P-AS1Q0IIN9 211 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 MMRN1Q13201 1228 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 SPNS2Q8IVW8 549 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 MOCOSQ96EN8 888 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 CALN1Q9BXU9 219 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 PAPOLBQ9NRJ5 636 aaKnown RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 NUB1Q9Y5A7 615 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 LIASO43766 372 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 TMEM63AO94886 807 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 HAUS5O94927 633 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 GGPS1O95749 300 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 GTF2H1P32780 548 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 CYP24A1Q07973 514 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 PPP6R3Q5H9R7 873 aaPredicted RBP13.66□□□□□ -0.22
SNX1-201ENST00000261889 RHOT1Q8IXI2 618 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ACTL9Q8TC94 416 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 CFAP57Q96MR6 1250 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 STRA6Q9BX79 667 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 CYP4F11Q9HBI6 524 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 SEL1LQ9UBV2 794 aa13.66□□□□□ -0.22
SNX1-201ENST00000261889 ZNF862O60290 1169 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 CD19P15391 556 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 SP100P23497 879 aaPredicted RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 MARK3P27448 753 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 RASSF2P50749 326 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 RPS6P62753 249 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 STAT4Q14765 748 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 SPDYCQ5MJ68 293 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 SH3PXD2AQ5TCZ1 1133 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 PALM2Q8IXS6 379 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 HACE1Q8IYU2 909 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 ASAP3Q8TDY4 903 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 DENND1AQ8TEH3 1009 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 TARS2Q9BW92 718 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 TMEM8AQ9HCN3 771 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 PPARGC1AQ9UBK2 798 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 NXF1Q9UBU9 619 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 LAMA2P24043 3122 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 CST3P01034 146 aaPredicted RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 TNFSF9P41273 254 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 OTUD4Q01804 1114 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 FAAP100Q0VG06 881 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 PDK4Q16654 411 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 HIF1AQ16665 826 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 C4orf50Q6ZRC1 276 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 PRPF39Q86UA1 669 aaKnown RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 UNC45BQ8IWX7 931 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 LMNTD2Q8IXW0 634 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 C12orf50Q8NA57 414 aaPredicted RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 RBBP8NLQ8NC74 664 aaPredicted RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 CFAP61Q8NHU2 1237 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 GRK7Q8WTQ7 553 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 ZDHHC15Q96MV8 337 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 TCHPQ9BT92 498 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 THTPAQ9BU02 230 aa13.65□□□□□ -0.22
SNX1-201ENST00000261889 CORO1CQ9ULV4 474 aaPredicted RBP13.65□□□□□ -0.22
SNX1-201ENST00000261889 YDJCA8MPS7 323 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 CST8O60676 142 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 MSX2P35548 267 aaPredicted RBP13.65□□□□□ -0.23
SNX1-201ENST00000261889 LIG4P49917 911 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 EPHB1P54762 984 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 UBAP2LQ14157 1087 aaKnown RBP13.65□□□□□ -0.23
SNX1-201ENST00000261889 AP1ARQ63HQ0 302 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 TATDN1Q6P1N9 297 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 PPM1NQ8N819 430 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 GMCL1Q96IK5 515 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 HAPLN2Q9GZV7 340 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 TMX4Q9H1E5 349 aaPredicted RBP13.65□□□□□ -0.23
SNX1-201ENST00000261889 OCEL1Q9H607 264 aa13.65□□□□□ -0.23
SNX1-201ENST00000261889 ATRNL1Q5VV63 1379 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 EDN1P05305 212 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 ESRRAP11474 423 aaPredicted RBP13.64□□□□□ -0.23
SNX1-201ENST00000261889 ARFIP2P53365 341 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 YARSP54577 528 aaKnown RBP13.64□□□□□ -0.23
SNX1-201ENST00000261889 KLC1Q07866 573 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 BSPRYQ5W0U4 402 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 SLC30A9Q6PML9 568 aa13.64□□□□□ -0.23
SNX1-201ENST00000261889 HHIPL2Q6UWX4 724 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms