RNA–Protein interactions for RNA: ENST00000261037.7

COL8A1-201, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL8A1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-201ENST00000261037 VPS50Q96JG6 964 aa12.61□□□□□ -0.39
COL8A1-201ENST00000261037 RSAD1Q9HA92 442 aa12.61□□□□□ -0.39
COL8A1-201ENST00000261037 DDX28Q9NUL7 540 aaKnown RBP12.61□□□□□ -0.39
COL8A1-201ENST00000261037 ALG6Q9Y672 507 aa12.61□□□□□ -0.39
COL8A1-201ENST00000261037 USP42Q9H9J4 1324 aaKnown RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 MSH4O15457 936 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 DDX5P17844 614 aaKnown RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 SEMA3FQ13275 785 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PWP1Q13610 501 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 GNASQ5JWF2 1037 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PLD3Q8IV08 490 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 ARMC2Q8NEN0 867 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 MDM1Q8TC05 714 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 HASPINQ8TF76 798 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 EME1Q96AY2 570 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 FAM136AQ96C01 138 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 MANSC1Q9H8J5 431 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 ZNF556Q9HAH1 456 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 SPON1Q9HCB6 807 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PNMA8BQ9ULN7 279 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 ZNF711Q9Y462 761 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PPP1R3GB7ZBB8 358 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 M0QYT0 321 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 TMEM253P0C7T8 217 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 FAM200BP0CF97 657 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PBLDP30039 288 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 COILP38432 576 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 NEK2P51955 445 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 UGP2Q16851 508 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 RUBCNQ92622 972 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 BRD8Q9H0E9 1235 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 ASCC2Q9H1I8 757 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 GPATCH2LQ9NWQ4 482 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 PCDHB2Q9Y5E7 798 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 TAL1P17542 331 aaPredicted RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 KLRC1P26715 233 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 CPT1AP50416 773 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 TRIM60Q495X7 471 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 TDRD10Q5VZ19 366 aaKnown RBP12.6□□□□□ -0.39
COL8A1-201ENST00000261037 ICE2Q659A1 982 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 DEFB129Q9H1M3 183 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 LOC100653049A0A140TA62 436 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 CAND2O75155 1236 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 KRT34O76011 436 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 VTNP04004 478 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 MED21Q13503 144 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 BARGINQ6ZT62 677 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 CATSPER1Q8NEC5 780 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 BLOC1S5Q8TDH9 187 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 KRT35Q92764 455 aa12.6□□□□□ -0.39
COL8A1-201ENST00000261037 EIF3HO15372 352 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 HBP1O60381 514 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CDH16O75309 829 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 ENDOD1O94919 500 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 WDR47O94967 919 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CTCFP49711 727 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 HUNKP57058 714 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 KCNK10P57789 538 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 OVGP1Q12889 678 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 DEPDC1Q5TB30 811 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 MIER2Q8N344 545 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 USP38Q8NB14 1042 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 KAT2BQ92831 832 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 FBXO28Q9NVF7 368 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 PRMT7Q9NVM4 692 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 C6orf203Q9P0P8 240 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CRLS1Q9UJA2 301 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 RIMS1Q86UR5 1692 aaKnown RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 ZNF189O75820 626 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 RALBP11234 206 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 PTGER2P43116 358 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 TAF6P49848 677 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 NME5P56597 212 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 VPS72Q15906 364 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 EFHC1Q5JVL4 640 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 PPIL6Q8IXY8 311 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 SCFD2Q8WU76 684 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 ATG4AQ8WYN0 398 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 HES6Q96HZ4 224 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 MTMR12Q9C0I1 747 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 IL25Q9H293 177 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CEP170BQ9Y4F5 1589 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 LRG1P02750 347 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 PGK2P07205 417 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CSF1RP07333 972 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 SNRPAP09012 282 aaKnown RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 UBTFL6P0CB48 400 aaPredicted RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 PCSK1P29120 753 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 FXR2P51116 673 aaKnown RBP eCLIP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 TRIM28Q13263 835 aaKnown RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CUL2Q13617 745 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CDH18Q13634 790 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 KCNT1Q5JUK3 1230 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 ZC4H2Q9NQZ6 224 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 SPATA31A6Q5VVP1 1343 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 B2RBV5 119 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CLASP2O75122 1294 aaKnown RBP12.59□□□□□ -0.39
COL8A1-201ENST00000261037 SLC25A27O95847 323 aa12.59□□□□□ -0.39
COL8A1-201ENST00000261037 CETPP11597 493 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms