RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	FLX1	P40464	311 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	BRR6	P53062	197 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	DOC1	P53068	250 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	SRL4	Q03085	281 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	YDR248C	Q03786	193 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	HPT1	Q04178	221 aa	Known RBP	0.88	□□□□□ -2.27
SHE9	YDR393W	YET3	Q07451	203 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	GRE1	Q08969	168 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	DAS2	Q12084	232 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	MHF1	Q3E835	90 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	YCL012C	Q8J0M4	134 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	YHR214C-E	Q8TGK0	99 aa		0.88	□□□□□ -2.27
SHE9	YDR393W	PHO13	P19881	312 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	YCR090C	P25654	182 aa	Known RBP	0.87	□□□□□ -2.27
SHE9	YDR393W	SNC2	P33328	115 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	RPS1A	P33442	255 aa	Known RBP	0.87	□□□□□ -2.27
SHE9	YDR393W	SKG1	P36169	355 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	YBR209W	P38311	105 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	ERJ5	P43613	295 aa	Predicted RBP	0.87	□□□□□ -2.27
SHE9	YDR393W	NUP57	P48837	541 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	0.87	□□□□□ -2.27	not detected
SHE9	YDR393W	FCY1	Q12178	158 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	YOR343C	Q12484	108 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	YMR105W-A	Q8TGS8	64 aa		0.87	□□□□□ -2.27
SHE9	YDR393W	COX5B	P00425	151 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	VAR1	P02381	398 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	SIR2	P06700	562 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	YCR016W	P25617	290 aa	Known RBP	0.86	□□□□□ -2.27
SHE9	YDR393W	HSP30	P25619	332 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	SEC17	P32602	292 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	NTF2	P33331	125 aa	Known RBP	0.86	□□□□□ -2.27
SHE9	YDR393W	HYR1	P40581	163 aa	Known RBP	0.86	□□□□□ -2.27
SHE9	YDR393W	PAC10	P48363	199 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	GEP7	P53171	287 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	GET1	P53192	235 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	YNR077C	P53758	84 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	FYV6	P53913	173 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	BRX1	Q08235	291 aa	Known RBP	0.86	□□□□□ -2.27
SHE9	YDR393W	YOL131W	Q08270	108 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	GET4	Q12125	312 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	TSC3	Q3E790	80 aa		0.86	□□□□□ -2.27
SHE9	YDR393W	URA6	P15700	204 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	YPK2	P18961	677 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	MRS4	P23500	304 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	PBN1	P25580	416 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	LHP1	P33399	275 aa	Known RBP	0.85	□□□□□ -2.27
SHE9	YDR393W	MRPL17	P36528	281 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	YCR087C-A	P37263	153 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	ETR1	P38071	380 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	YER076C	P40049	302 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	PRM8	P53174	237 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	UBC7	Q02159	165 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	YLR283W	Q05867	314 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	IRC19	Q07843	230 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	TDA8	Q6B2U8	126 aa		0.85	□□□□□ -2.27
SHE9	YDR393W	BUB2	P26448	306 aa	Predicted RBP	0.84	□□□□□ -2.27
SHE9	YDR393W	PPA2	P28239	310 aa		0.84	□□□□□ -2.27
SHE9	YDR393W	RIO2	P40160	425 aa	Known RBP	0.84	□□□□□ -2.27
SHE9	YDR393W	GVP36	P40531	326 aa	Known RBP	0.84	□□□□□ -2.27
SHE9	YDR393W	CUS2	P53830	285 aa	Predicted RBP	0.84	□□□□□ -2.27
SHE9	YDR393W	MER1	P16523	270 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	TIM12	P32830	109 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	ARC19	P33204	171 aa	Known RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	PTC1	P35182	281 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	RMD6	P39975	231 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	COX15	P40086	486 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	LIA1	P47120	325 aa	Known RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	NOP19	P53317	196 aa	Predicted RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	POP3	P53833	195 aa	Predicted RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	RRN5	Q02983	363 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	YDR476C	Q03362	224 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	FSF1	Q12029	327 aa	Known RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	JLP1	Q12358	412 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	YKL018C-A	Q3E7A7	99 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	CDC28	P00546	298 aa	Known RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	SUA7	P29055	345 aa	Predicted RBP	0.83	□□□□□ -2.28
SHE9	YDR393W	SRY1	P36007	326 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	FAR7	P43592	221 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	VPS55	P47111	140 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	KNH1	P50112	268 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	YDC1	Q02896	317 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	GPI17	Q04080	534 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	YLR053C	Q12026	108 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	YNL146C-A	Q3E7Z1	64 aa		0.83	□□□□□ -2.28
SHE9	YDR393W	MATALPHA1	P0CY06	175 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	HMLALPHA1	P0CY07	175 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	NMT1	P14743	455 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	PHO85	P17157	305 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	STE18	P18852	110 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	MSN4	P33749	630 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	CAF4	P36130	643 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	SRL3	P36167	246 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	BXI1	P48558	297 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	RPL37A	P49166	88 aa	Known RBP	0.82	□□□□□ -2.28
SHE9	YDR393W	MIC26	P50087	233 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	SOL1	P50278	321 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	PET191	Q02772	108 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	BNA7	Q04066	261 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	YDR391C	Q04170	232 aa		0.82	□□□□□ -2.28
SHE9	YDR393W	HOR7	Q05827	59 aa		0.82	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 82.2 ms