RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 RSAD1Q9HA92 442 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 UBE2TQ9NPD8 197 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HEY2Q9UBP5 337 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FETUBQ9UGM5 382 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF221Q9UK13 617 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 THRAP3Q9Y2W1 955 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MRPL11Q9Y3B7 192 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HEATR9A2RTY3 570 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CENPBD1B2RD01 187 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CD3EAPO15446 510 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZPR1O75312 459 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SERPINE1P05121 402 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SNAP25P60880 206 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 AMPD2Q01433 879 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 KYAT3Q6YP21 454 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SLC26A11Q86WA9 606 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HSPH1Q92598 858 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FAF2Q96CS3 445 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CDHR1Q96JP9 859 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TSPAN18Q96SJ8 248 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RPRD1BQ9NQG5 326 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 NMRK1Q9NWW6 199 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PCDHB6Q9Y5E3 794 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MAGEB16A2A368 324 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 GJB6O95452 261 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ASMTLO95671 621 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PORP16435 677 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ME2P23368 584 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LRRC14Q15048 493 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 C5orf22Q49AR2 442 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ANKRD23Q86SG2 305 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ERICH1Q86X53 443 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 AHI1Q8N157 1196 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 STAMQ92783 540 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MRPL48Q96GC5 212 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ASB2Q96Q27 587 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SLC25A23Q9BV35 468 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 OSBPL10Q9BXB5 764 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MYLK2Q9H1R3 596 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ADAM22Q9P0K1 906 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 VPS9D1Q9Y2B5 631 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ATP5J2-PTCD1G3V325 749 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RGL2O15211 777 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PTCD1O75127 700 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LIG4P49917 911 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ARSEP51690 589 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 NCKAP1LP55160 1127 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TNFAIP8L3Q5GJ75 292 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RMDN3Q96TC7 470 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 EPAS1Q99814 870 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 KRT84Q9NSB2 600 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 COQ6Q9Y2Z9 468 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LRRC7Q96NW7 1537 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 IRS4O14654 1257 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PEX1O43933 1283 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PSMA3P25788 255 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TYK2P29597 1187 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LRPAP1P30533 357 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ADD2P35612 726 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CASP5P51878 434 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CCNG1P51959 295 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 C1DQ13901 141 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HACE1Q8IYU2 909 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PDCD6IPQ8WUM4 868 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ARMT1Q9H993 441 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 INO80Q9ULG1 1556 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ARPC4-TTLL3A0A0A6YYG9 625 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 XPAP23025 273 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FDFT1P37268 417 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ALDH18A1P54886 795 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 LONRF1Q17RB8 773 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SCARA3Q6AZY7 606 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ZNF544Q6NX49 715 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MTDHQ86UE4 582 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CLEC4FQ8N1N0 589 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 DAGLBQ8NCG7 672 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 JARID2Q92833 1246 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 SENP7Q9BQF6 1050 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MYL10Q9BUA6 226 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PCYOX1Q9UHG3 505 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MAPRE3Q9UPY8 281 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TBX3O15119 743 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MAGEB2O15479 319 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 FKBP9O95302 570 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 MYL2P10916 166 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TNFAIP2Q03169 654 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM71Q2Q1W2 868 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ARL13BQ3SXY8 428 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 BRDTQ58F21 947 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TTMPQ5BVD1 217 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 CLVS1Q8IUQ0 354 aaPredicted RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 HIPK4Q8NE63 616 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RNASE11Q8TAA1 199 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 ACMSDQ8TDX5 336 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 INTS2Q9H0H0 1204 aaKnown RBP4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TAS2R1Q9NYW7 299 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 TRIM17Q9Y577 477 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 IGSF1Q8N6C5 1336 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 RIPK2O43353 540 aa4.86□□□□□ -1.63
SCN1A-220ENST00000641603 PLA2G4BP0C869 781 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms