RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ZNF638Q14966 1978 aaKnown RBP16.25■□□□□ 0.19
SYNE2-228ENST00000639659 RNF40O75150 1001 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 EPN2O95208 641 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 RUNX3Q13761 415 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 KYAT1Q16773 422 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 STPG1Q5TH74 334 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 FSTL4Q6MZW2 842 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 CC2D1AQ6P1N0 951 aaPredicted RBP16.24■□□□□ 0.19
SYNE2-228ENST00000639659 CMTM8Q8IZV2 173 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 RASSF8Q8NHQ8 419 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 REEP2Q9BRK0 252 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 SLC46A2Q9BY10 475 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 IL21Q9HBE4 155 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.24■□□□□ 0.19
SYNE2-228ENST00000639659 RALYQ9UKM9 306 aaKnown RBP16.24■□□□□ 0.19
SYNE2-228ENST00000639659 TBX20Q9UMR3 447 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 CCL26Q9Y258 94 aa16.24■□□□□ 0.19
SYNE2-228ENST00000639659 CYB561D2O14569 222 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 SEC24BO95487 1268 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 EGFP01133 1207 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 ZNF806P0C7X5 589 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 ARSAP15289 507 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 MPLP40238 635 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 ACOT2P49753 483 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 PSMD2Q13200 908 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 TCEAL6Q6IPX3 200 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 THEM5Q8N1Q8 247 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 TCEAL3Q969E4 200 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 ZSCAN31Q96LW9 406 aaPredicted RBP16.23■□□□□ 0.19
SYNE2-228ENST00000639659 ZCWPW1Q9H0M4 648 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 HPS4Q9NQG7 708 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 SCN1AP35498 2009 aa16.23■□□□□ 0.19
SYNE2-228ENST00000639659 CNOT1A5YKK6 2376 aaKnown RBP16.22■□□□□ 0.19
SYNE2-228ENST00000639659 ATG13O75143 517 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 HOXA6P31267 233 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 GPR15P49685 360 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 HYIQ5T013 277 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 SDHAF4Q5VUM1 108 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 WSCD1Q658N2 575 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 RNF43Q68DV7 783 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 TXNDC8Q6A555 127 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 TRPC7Q9HCX4 862 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 SH2B1Q9NRF2 756 aaPredicted RBP16.22■□□□□ 0.19
SYNE2-228ENST00000639659 KCND2Q9NZV8 630 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 DSEQ9UL01 958 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 USP24Q9UPU5 2620 aa16.22■□□□□ 0.19
SYNE2-228ENST00000639659 EML5Q05BV3 1969 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 OTOL1A6NHN0 477 aaPredicted RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 TISP43B9A030 160 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 FAM189A1O60320 539 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 TBCAO75347 108 aaKnown RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 HAPLN1P10915 354 aaPredicted RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 PMLP29590 882 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 GBP1P32455 592 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 TAF6P49848 677 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 LIMK1P53667 647 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 ATP2C1P98194 919 aaPredicted RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 CREB5Q02930 508 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 TMEM119Q4V9L6 283 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 ARSHQ5FYA8 562 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 TMEM196Q5HYL7 178 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 NAIF1Q69YI7 327 aaPredicted RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 PSAPL1Q6NUJ1 521 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 LRRTM3Q86VH5 581 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 CD302Q8IX05 232 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 SPPL2BQ8TCT7 592 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 MRPS31Q92665 395 aaKnown RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 USP13Q92995 863 aaPredicted RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 CHFRQ96EP1 664 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 LOXL4Q96JB6 756 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 PI4K2AQ9BTU6 479 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 HSFX1Q9UBD0 423 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 CPSF3Q9UKF6 684 aaKnown RBP16.21■□□□□ 0.19
SYNE2-228ENST00000639659 ODF2LQ9ULJ1 636 aa16.21■□□□□ 0.19
SYNE2-228ENST00000639659 A0A0B4J269 797 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 PIRO00625 290 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 DCLK1O15075 740 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 TRAK2O60296 914 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 EIF5BO60841 1220 aaKnown RBP16.2■□□□□ 0.18
SYNE2-228ENST00000639659 PRPF40AO75400 957 aaKnown RBP16.2■□□□□ 0.18
SYNE2-228ENST00000639659 CYP11A1P05108 521 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 RAP1GAPP47736 663 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 NLRP12P59046 1061 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 ELF2Q15723 593 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 RILPL1Q5EBL4 403 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 ADALQ6DHV7 355 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 SLC39A4Q6P5W5 647 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 DCP1BQ8IZD4 617 aaKnown RBP16.2■□□□□ 0.18
SYNE2-228ENST00000639659 RPLP0P6Q8NHW5 317 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 CALML4Q96GE6 196 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 FAM83CQ9BQN1 747 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 EDEM2Q9BV94 578 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 PARVGQ9HBI0 331 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 TDP1Q9NUW8 608 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 DPP3Q9NY33 737 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 INVSQ9Y283 1065 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 PCDHB5Q9Y5E4 795 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 CFAP47Q6ZTR5 3102 aa16.2■□□□□ 0.18
SYNE2-228ENST00000639659 OBSL1O75147 1896 aa16.19■□□□□ 0.18
SYNE2-228ENST00000639659 ANKRD63C9JTQ0 380 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms