RNA–Protein interactions for RNA: ENST00000638725.1

SNIP1-204, Transcript of Smad nuclear interacting protein 1, humanhuman

TSL 2

Gene SNIP1, Length 2,761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-204ENST00000638725 TUBP50607 506 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 VCPP55072 806 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 GEMIN4P57678 1058 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SESN3P58005 492 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SATB1Q01826 763 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SLC27A3Q5K4L6 730 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 TRIM72Q6ZMU5 477 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 VCPIP1Q96JH7 1222 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 LBHD1Q9BQE6 289 aaPredicted RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 CADM1Q9BY67 442 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 TLE6Q9H808 572 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 PARVAQ9NVD7 372 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SLC17A7Q9P2U7 560 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 RABGEF1Q9UJ41 708 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SHOC2Q9UQ13 582 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 ATP2A1O14983 1001 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 ZWINTO95229 277 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 TROVE2P10155 538 aaKnown RBP eCLIP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 ATP4AP20648 1035 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 CTCFP49711 727 aaPredicted RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 RPS6P62753 249 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 OGDHQ02218 1023 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 C1QBPQ07021 282 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 PSMD6Q15008 389 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 MSS51Q4VC12 460 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 KHDC1Q4VXA5 237 aaKnown RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 ANKRD22Q5VYY1 191 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SCARA3Q6AZY7 606 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 DSTYKQ6XUX3 929 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 LMNTD2Q8IXW0 634 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 ZNF276Q8N554 614 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 TCP10LQ8TDR4 215 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 MCEEQ96PE7 176 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 XPNPEP1Q9NQW7 623 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 SAE1Q9UBE0 346 aaPredicted RBP11.5□□□□□ -0.57
SNIP1-204ENST00000638725 GABBR1Q9UBS5 961 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 LNPEPQ9UIQ6 1025 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 TELO2Q9Y4R8 837 aa11.5□□□□□ -0.57
SNIP1-204ENST00000638725 hCG_1818297A0A087WSY0 165 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 A0A0G2JND7 137 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 LRRD1A4D1F6 860 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 YDJCA8MPS7 323 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 EXTL3O43909 919 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 MMP10P09238 476 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SFNP31947 248 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 LIG4P49917 911 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 KRT76Q01546 638 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 DGKZQ13574 1117 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SEPT7Q16181 437 aaKnown RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 HIF1AQ16665 826 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 FNBP1LQ5T0N5 605 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 C4orf50Q6ZRC1 276 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 APBB1IPQ7Z5R6 666 aaPredicted RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 MCF2L2Q86YR7 1114 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 DNAJC9Q8WXX5 260 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 PTPRN2Q92932 1015 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 PRR11Q96HE9 360 aaPredicted RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 GJD4Q96KN9 370 aaPredicted RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 PAFAH2Q99487 392 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 PCDH9Q9HC56 1237 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SAR1AQ9NR31 198 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 ARL8BQ9NVJ2 186 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 ANKFY1Q9P2R3 1169 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 DRG1Q9Y295 367 aaKnown RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 CFAP69A5D8W1 941 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 TMEM191CA6NGB0 347 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SPDYE2BA6NHP3 402 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SPDYE5A6NIY4 337 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 TMEM191BP0C7N4 346 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SPDYE6P0CI01 402 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 RASA2Q15283 850 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SPDYAQ5MJ70 313 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 SEPT12Q8IYM1 358 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 FBXO41Q8TF61 875 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 FAM151AQ8WW52 585 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 WDR83Q9BRX9 315 aaKnown RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 TMEM39BQ9GZU3 492 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 DCLRE1BQ9H816 532 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 ZNF70Q9UC06 446 aaPredicted RBP11.49□□□□□ -0.57
SNIP1-204ENST00000638725 NUB1Q9Y5A7 615 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 ZNF541Q9H0D2 1346 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 CNTNAP1P78357 1384 aa11.49□□□□□ -0.57
SNIP1-204ENST00000638725 RGPD3A6NKT7 1758 aaPredicted RBP11.48□□□□□ -0.57
SNIP1-204ENST00000638725 HAUS5O94927 633 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 GDF10P55107 478 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 DYNLT1P63172 113 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 CLDN10P78369 228 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 SP4Q02446 784 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 MCL1Q07820 350 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 TSNAXIP1Q2TAA8 658 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 MUM1Q2TAK8 710 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 ZBTB41Q5SVQ8 909 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 RGPD4Q7Z3J3 1758 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 LRRC6Q86X45 466 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 RHPN2Q8IUC4 686 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 NLGN1Q8N2Q7 840 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 PYROXD1Q8WU10 500 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 MZB1Q8WU39 189 aa11.48□□□□□ -0.57
SNIP1-204ENST00000638725 ZBTB45Q96K62 511 aaPredicted RBP11.48□□□□□ -0.57
SNIP1-204ENST00000638725 RMDN3Q96TC7 470 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms