RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 AGO2Q9UKV8 859 aaKnown RBP19.31■□□□□ 0.68
CIITA-215ENST00000637439 DYNC1LI1Q9Y6G9 523 aaKnown RBP19.31■□□□□ 0.68
CIITA-215ENST00000637439 STYXL1Q9Y6J8 313 aa19.31■□□□□ 0.68
CIITA-215ENST00000637439 ANKRD63C9JTQ0 380 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 SLC30A4O14863 429 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 PRAMEF12O95522 483 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 ATF6P18850 670 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 NMT1P30419 496 aaKnown RBP19.3■□□□□ 0.68
CIITA-215ENST00000637439 CYP4F8P98187 520 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 DMWDQ09019 674 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 SV2CQ496J9 727 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 CEP68Q76N32 757 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 NT5DC4Q86YG4 428 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 KRI1Q8N9T8 703 aaKnown RBP19.3■□□□□ 0.68
CIITA-215ENST00000637439 LRRC15Q8TF66 581 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 LARP4BQ92615 738 aaKnown RBP19.3■□□□□ 0.68
CIITA-215ENST00000637439 IL21Q9HBE4 155 aa19.3■□□□□ 0.68
CIITA-215ENST00000637439 SOBPA7XYQ1 873 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 HAPLN1P10915 354 aaPredicted RBP19.29■□□□□ 0.68
CIITA-215ENST00000637439 DDX6P26196 483 aaKnown RBP eCLIP19.29■□□□□ 0.68
CIITA-215ENST00000637439 TNK2Q07912 1038 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 KARSQ15046 597 aaKnown RBP19.29■□□□□ 0.68
CIITA-215ENST00000637439 POSTNQ15063 836 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 C8orf34Q49A92 452 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 WDR44Q5JSH3 913 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 HEATR6Q6AI08 1181 aaKnown RBP19.29■□□□□ 0.68
CIITA-215ENST00000637439 PRR23CQ6ZRP0 262 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 BRAPQ7Z569 592 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 WDR5BQ86VZ2 330 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 CMTM8Q8IZV2 173 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 HVCN1Q96D96 273 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 CNTNAP3BQ96NU0 1288 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 SLC46A2Q9BY10 475 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 CNTNAP3Q9BZ76 1288 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 SMC3Q9UQE7 1217 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 TCHHQ07283 1943 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 SCN1AP35498 2009 aa19.29■□□□□ 0.68
CIITA-215ENST00000637439 LOC105378220A0A1B0GUY1 285 aaPredicted RBP19.28■□□□□ 0.68
CIITA-215ENST00000637439 KPNA7A9QM74 516 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 IL18RAPO95256 599 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 DDIT3P35638 169 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 AVPR1AP37288 418 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 PNPLA4P41247 253 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 AMPD2Q01433 879 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 ZC2HC1CQ53FD0 456 aaPredicted RBP19.28■□□□□ 0.68
CIITA-215ENST00000637439 WSCD1Q658N2 575 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 LARP1BQ659C4 914 aaKnown RBP19.28■□□□□ 0.68
CIITA-215ENST00000637439 GIPC2Q8TF65 315 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 ZNF560Q96MR9 790 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 KIF9Q9HAQ2 790 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 GKN1Q9NS71 199 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 ABI2Q9NYB9 513 aaPredicted RBP19.28■□□□□ 0.68
CIITA-215ENST00000637439 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.28■□□□□ 0.68
CIITA-215ENST00000637439 PCDHB5Q9Y5E4 795 aa19.28■□□□□ 0.68
CIITA-215ENST00000637439 RALGAPA1Q6GYQ0 2036 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 KIF26AQ9ULI4 1882 aaPredicted RBP19.27■□□□□ 0.68
CIITA-215ENST00000637439 ATG13O75143 517 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 TSPY1Q01534 308 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 GRSF1Q12849 480 aaKnown RBP eCLIP19.27■□□□□ 0.68
CIITA-215ENST00000637439 BFSP1Q12934 665 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 SRSF5Q13243 272 aaKnown RBP19.27■□□□□ 0.68
CIITA-215ENST00000637439 NFE2Q16621 373 aaPredicted RBP19.27■□□□□ 0.68
CIITA-215ENST00000637439 ZNF720Q7Z2F6 126 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 LRRTM3Q86VH5 581 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 FAM160A2Q8N612 972 aaPredicted RBP19.27■□□□□ 0.68
CIITA-215ENST00000637439 POMGNT1Q8WZA1 660 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 FAM83CQ9BQN1 747 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 SEL1LQ9UBV2 794 aa19.27■□□□□ 0.68
CIITA-215ENST00000637439 SPTBN2O15020 2390 aa19.27■□□□□ 0.67
CIITA-215ENST00000637439 CCDC163A0A0D9SF12 145 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 TISP43B9A030 160 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 F11P03951 625 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 ADRB1P08588 477 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 CSH1P0DML2 217 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 CSH2P0DML3 217 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 NLRP12P59046 1061 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 RUNX3Q13761 415 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 DDX1Q92499 740 aaKnown RBP19.26■□□□□ 0.67
CIITA-215ENST00000637439 EXOC4Q96A65 974 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 LOXL4Q96JB6 756 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 SMG9Q9H0W8 520 aaKnown RBP19.26■□□□□ 0.67
CIITA-215ENST00000637439 TDP1Q9NUW8 608 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 EXOC7Q9UPT5 735 aa19.26■□□□□ 0.67
CIITA-215ENST00000637439 DENND4CQ5VZ89 1909 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 GRIN1Q05586 938 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 SF3A1Q15459 793 aaKnown RBP19.25■□□□□ 0.67
CIITA-215ENST00000637439 TMEM196Q5HYL7 178 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 PPM1JQ5JR12 505 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 CC2D1AQ6P1N0 951 aaPredicted RBP19.25■□□□□ 0.67
CIITA-215ENST00000637439 CRELD2Q6UXH1 353 aaPredicted RBP19.25■□□□□ 0.67
CIITA-215ENST00000637439 EFCAB13Q8IY85 973 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 MAB21L3Q8N8X9 362 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 MRPS31Q92665 395 aaKnown RBP19.25■□□□□ 0.67
CIITA-215ENST00000637439 C2orf42Q9NWW7 574 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 UXTQ9UBK9 157 aaPredicted RBP19.25■□□□□ 0.67
CIITA-215ENST00000637439 STK17AQ9UEE5 414 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 CCDC39Q9UFE4 941 aa19.25■□□□□ 0.67
CIITA-215ENST00000637439 EPG5Q9HCE0 2579 aa19.24■□□□□ 0.67
CIITA-215ENST00000637439 TRDMT1O14717 391 aaKnown RBP19.24■□□□□ 0.67
CIITA-215ENST00000637439 EXTL3O43909 919 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms