RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 OSBPL9Q96SU4 736 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 MMS19Q96T76 1030 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 NUP85Q9BW27 656 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 CARD9Q9H257 536 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 RNF39Q9H2S5 420 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 PARVAQ9NVD7 372 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 TMEM161AQ9NX61 479 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 ADAM22Q9P0K1 906 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 KANSL3Q9P2N6 904 aa11.23□□□□□ -0.61
CLN3-248ENST00000636355 CNOT8Q9UFF9 292 aaKnown RBP11.23□□□□□ -0.61
CLN3-248ENST00000636355 CTAGE15A4D2H0 777 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 DCDC2CA8MYV0 355 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CXCL10P02778 98 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 TUBBP07437 444 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CTAGE8P0CG41 777 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CD19P15391 556 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 PTPRDP23468 1912 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 RFC2P35250 354 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 SCNN1AP37088 669 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 RAP1GAPP47736 663 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 NDST1P52848 882 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 FAM189BP81408 668 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 PTP4A2Q12974 167 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 TUSC3Q13454 348 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 RPS6KA1Q15418 735 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 SOWAHAQ2M3V2 549 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CTAGE6Q86UF2 777 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CTAGE4Q8IX94 777 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 ADGRF2Q8IZF7 708 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CRYBG2Q8N1P7 616 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 URGCPQ8TCY9 931 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 IPO4Q8TEX9 1081 aaKnown RBP11.22□□□□□ -0.61
CLN3-248ENST00000636355 FNIP1Q8TF40 1166 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 TFAP2BQ92481 460 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 SEPT8Q92599 483 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 GOLGA1Q92805 767 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 ELMO3Q96BJ8 720 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CYFIP2Q96F07 1278 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 GAD1Q99259 594 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 PLVAPQ9BX97 442 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 ELOVL4Q9GZR5 314 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 WNT8AQ9H1J5 351 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 OSGEPQ9NPF4 335 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 KLK14Q9P0G3 267 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 PUF60Q9UHX1 559 aaKnown RBP11.22□□□□□ -0.61
CLN3-248ENST00000636355 AMFRQ9UKV5 643 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 DSEQ9UL01 958 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 STXBP5LQ9Y2K9 1186 aa11.22□□□□□ -0.61
CLN3-248ENST00000636355 CCDC66A2RUB6 948 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 PODXLO00592 558 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 ENC1O14682 589 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 PPEF2O14830 753 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 FTCDO95954 541 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 CYP11A1P05108 521 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 ODC1P11926 461 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 GABRB2P47870 512 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 GJA8P48165 433 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 LHX1P48742 406 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 SCNN1GP51170 649 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 BCAT1P54687 386 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 DSC1Q08554 894 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 UPP1Q16831 310 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 CFAP221Q4G0U5 840 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 CCDC181Q5TID7 509 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 SCARA3Q6AZY7 606 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 ZDHHC17Q8IUH5 632 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 UBL4BQ8N7F7 174 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 NIPA2Q8N8Q9 360 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 KBTBD7Q8WVZ9 684 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 RABGGTAQ92696 567 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 TWNKQ96RR1 684 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 NAP1L3Q99457 506 aaPredicted RBP11.21□□□□□ -0.61
CLN3-248ENST00000636355 ZSWIM1Q9BR11 485 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 C11orf70Q9BRQ4 267 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 SELENOOQ9BVL4 669 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 CARD6Q9BX69 1037 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 SNX25Q9H3E2 840 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 HMGXB4Q9UGU5 601 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 TTC7AQ9ULT0 858 aaPredicted RBP11.21□□□□□ -0.61
CLN3-248ENST00000636355 COG5Q9UP83 839 aa11.21□□□□□ -0.61
CLN3-248ENST00000636355 SCN5AQ14524 2016 aa11.21□□□□□ -0.62
CLN3-248ENST00000636355 FNDC1Q4ZHG4 1894 aaPredicted RBP11.21□□□□□ -0.62
CLN3-248ENST00000636355 DNAH12Q6ZR08 3092 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 TCRBV5S1A1TA0A578 114 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CARNS1A5YM72 827 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 M0QYV0 167 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 GABRDO14764 452 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 MICAL2O94851 1124 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 RRM1P23921 792 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CTNNA2P26232 953 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 PCSK1P29120 753 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 CTNNA1P35221 906 aaKnown RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 PAFAH1B1P43034 410 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 MNX1P50219 401 aaPredicted RBP11.2□□□□□ -0.62
CLN3-248ENST00000636355 CDH8P55286 799 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 PDCLQ13371 301 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 PKDCCQ504Y2 493 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 ZNF394Q53GI3 561 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 DNAJC24Q6P3W2 148 aa11.2□□□□□ -0.62
CLN3-248ENST00000636355 SLC39A5Q6ZMH5 540 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms