RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TFAMQ00059 246 aaKnown RBP17.43■□□□□ 0.38
CLN3-246ENST00000636228 VEPH1Q14D04 833 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 TAF12Q16514 161 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 SDHAF4Q5VUM1 108 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 RRAGBQ5VZM2 374 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 HEATR6Q6AI08 1181 aaKnown RBP17.43■□□□□ 0.38
CLN3-246ENST00000636228 PRR23BQ6ZRT6 265 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 BPIFB1Q8TDL5 484 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 SECISBP2LQ93073 1101 aaKnown RBP17.43■□□□□ 0.38
CLN3-246ENST00000636228 DNAJC19Q96DA6 116 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 STRA6Q9BX79 667 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 HSFX1Q9UBD0 423 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 CCDC39Q9UFE4 941 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 COL4A2P08572 1712 aa17.43■□□□□ 0.38
CLN3-246ENST00000636228 GOLGA8IPA6NC78 632 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 GOLGA8JA6NMD2 632 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 HRO43593 1189 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 PPP1R37O75864 691 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 ABCD1P33897 745 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 CASP5P51878 434 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 MLLT6P55198 1093 aaPredicted RBP17.42■□□□□ 0.38
CLN3-246ENST00000636228 SPEM2Q0P670 501 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 LRRC32Q14392 662 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 PPP2R5DQ14738 602 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 ARHGAP29Q52LW3 1261 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 SV2BQ7L1I2 683 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 SPEM1Q8N4L4 309 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 NOC3LQ8WTT2 800 aaKnown RBP17.42■□□□□ 0.38
CLN3-246ENST00000636228 GCNAQ96QF7 691 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 ACCSQ96QU6 501 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 PI4K2AQ9BTU6 479 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 FGFBP2Q9BYJ0 223 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 GMEB2Q9UKD1 530 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 AGAP1Q9UPQ3 857 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 CCL26Q9Y258 94 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 SRPRBQ9Y5M8 271 aaKnown RBP17.42■□□□□ 0.38
CLN3-246ENST00000636228 MYH11P35749 1972 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 FANCMQ8IYD8 2048 aa17.42■□□□□ 0.38
CLN3-246ENST00000636228 K7ESF4 209 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 GCNT3O95395 438 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 ITGB3P05106 788 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 IDEP14735 1019 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 HMGA1P17096 107 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 ACAT1P24752 427 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 CDC25CP30307 473 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 POLR2BP30876 1174 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 ATXN1P54253 815 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 RESTQ13127 1097 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 CUL4AQ13619 759 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 POSTNQ15063 836 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 SV2CQ496J9 727 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 L1TD1Q5T7N2 865 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 TXNDC8Q6A555 127 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 TMEM150AQ86TG1 271 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 RALGPS2Q86X27 583 aaPredicted RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 DCP1BQ8IZD4 617 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 CELF5Q8N6W0 485 aaKnown RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 MAB21L3Q8N8X9 362 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 SPPL2BQ8TCT7 592 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 HVCN1Q96D96 273 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 IER2Q9BTL4 223 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 PCIF1Q9H4Z3 704 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 GKN1Q9NS71 199 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 OBP2AQ9NY56 170 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 STK17AQ9UEE5 414 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 RAB23Q9ULC3 237 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 MAGED2Q9UNF1 606 aaPredicted RBP17.41■□□□□ 0.38
CLN3-246ENST00000636228 PCDHB5Q9Y5E4 795 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 TICRRQ7Z2Z1 1910 aa17.41■□□□□ 0.38
CLN3-246ENST00000636228 A0A087X0B3 334 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 HCRTO43612 131 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 PRPF40AO75400 957 aaKnown RBP17.4■□□□□ 0.38
CLN3-246ENST00000636228 IL18RAPO95256 599 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 F11P03951 625 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 SIM2Q14190 667 aaPredicted RBP17.4■□□□□ 0.38
CLN3-246ENST00000636228 DDR2Q16832 855 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 CCDC142Q17RM4 750 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 TRIM68Q6AZZ1 485 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 CMTM8Q8IZV2 173 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 PDCL2Q8N4E4 241 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 CSGALNACT2Q8N6G5 542 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 GPR161Q8N6U8 529 aaKnown RBP17.4■□□□□ 0.38
CLN3-246ENST00000636228 C1orf127Q8N9H9 656 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 C2orf15Q8WU43 125 aaKnown RBP17.4■□□□□ 0.38
CLN3-246ENST00000636228 MSANTD3Q96H12 275 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 CBWD1Q9BRT8 395 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 FOXD4L1Q9NU39 408 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 L1RE1Q9UN81 338 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 EXOC7Q9UPT5 735 aa17.4■□□□□ 0.38
CLN3-246ENST00000636228 DCDC2BA2VCK2 349 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 SYT1P21579 422 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 NLRP12P59046 1061 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 POU5F1Q01860 360 aaKnown RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 BFSP1Q12934 665 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 DGKKQ5KSL6 1271 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 LMBRD2Q68DH5 695 aaPredicted RBP17.39■□□□□ 0.37
CLN3-246ENST00000636228 PKN3Q6P5Z2 889 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 BRSK2Q8IWQ3 736 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 SYCP3Q8IZU3 236 aa17.39■□□□□ 0.37
CLN3-246ENST00000636228 RIN3Q8TB24 985 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms