RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 SLC17A7Q9P2U7 560 aa11.58□□□□□ -0.56
CLN3-244ENST00000636147 UBR1Q8IWV7 1749 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 SYNJ2BP-COX16A0A087WUM0 186 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 K7ERI5 159 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 FSCN2O14926 492 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 BBOX1O75936 387 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 ABL2P42684 1182 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 RPS6KA3P51812 740 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 MCL1Q07820 350 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 EFTUD2Q15029 972 aaKnown RBP eCLIP11.57□□□□□ -0.563e-6■■■■□ 22
CLN3-244ENST00000636147 DNAL1Q4LDG9 190 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 C1orf186Q6ZWK4 172 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 ACTL9Q8TC94 416 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 EZH1Q92800 747 aaPredicted RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 MSTO1Q9BUK6 570 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 MIS12Q9H081 205 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 TMEM8AQ9HCN3 771 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 COX16Q9P0S2 106 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 PCDHA2Q9Y5H9 948 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 SPEF2Q9C093 1822 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 DNALI1O14645 258 aaPredicted RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 MEIS2O14770 477 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 GSC2O15499 205 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 HLA-DRAP01903 254 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 TCN1P20061 433 aaPredicted RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 POU5F1Q01860 360 aaKnown RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 USP4Q13107 963 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 TTC7BQ86TV6 843 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 LRRC43Q8N309 656 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 FEZF2Q8TBJ5 459 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 OXNAD1Q96HP4 312 aaPredicted RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 GORASP1Q9BQQ3 440 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 FOXP3Q9BZS1 431 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 AIM2O14862 343 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 FESP07332 822 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 PSMC1P62191 440 aaKnown RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 SEPT6Q14141 434 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 ACSBG2Q5FVE4 666 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 NLRP7Q8WX94 980 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 MPP4Q96JB8 637 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 SCYL1Q96KG9 808 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 CADM1Q9BY67 442 aaKnown RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 SAR1AQ9NR31 198 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 FBXO28Q9NVF7 368 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 ZC3H7BQ9UGR2 993 aaKnown RBP11.57□□□□□ -0.56
CLN3-244ENST00000636147 KAT6AQ92794 2004 aa11.57□□□□□ -0.56
CLN3-244ENST00000636147 MYH7P12883 1935 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 NEMP1O14524 444 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 NOL3O60936 208 aaKnown RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 OTUD4Q01804 1114 aaKnown RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 CLEC16AQ2KHT3 1053 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 OTOP1Q7RTM1 612 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 ALYREFQ86V81 257 aaKnown RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 GPD1LQ8N335 351 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CCDC33Q8N5R6 958 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 NDNQ99608 321 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 GINS2Q9Y248 185 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 PPEF1O14829 653 aaPredicted RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 LIN7AO14910 233 aaPredicted RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 SUPT3HO75486 399 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 DGKIO75912 1065 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 HSPA4LO95757 839 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CETPP11597 493 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 MX2P20592 715 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 HOXD13P35453 343 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CDH6P55285 790 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 FAAP100Q0VG06 881 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 GEN1Q17RS7 908 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 TCHHL1Q5QJ38 904 aaPredicted RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 TNS2Q63HR2 1409 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 OR6B2Q6IFH4 312 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 FOXR2Q6PJQ5 311 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 ZCCHC9Q8N567 271 aaKnown RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 SPATA18Q8TC71 538 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CNBD2Q96M20 576 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CCDC134Q9H6E4 229 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 IVNS1ABPQ9Y6Y0 642 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 LMO7Q8WWI1 1683 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 P4HA2O15460 535 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 TBX10O75333 385 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CHRNB2P17787 502 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 SHMT1P34896 483 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 RHBDL3P58872 404 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 TAS2R40P59535 323 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CDK16Q00536 496 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 PPIL6Q8IXY8 311 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CNKSR2Q8WXI2 1034 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 CDKL2Q92772 493 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 DTNBP1Q96EV8 351 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 KREMEN1Q96MU8 473 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 EPB41L4BQ9H329 900 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 RBAKQ9NYW8 714 aaPredicted RBP11.56□□□□□ -0.56
CLN3-244ENST00000636147 GABBR1Q9UBS5 961 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 APPL1Q9UKG1 709 aa11.56□□□□□ -0.56
CLN3-244ENST00000636147 C2CD2LO14523 706 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 RAD17O75943 681 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 PYGLP06737 847 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 ART3Q13508 389 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 LDHDQ86WU2 507 aa11.55□□□□□ -0.56
CLN3-244ENST00000636147 TMPRSS6Q8IU80 811 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms