RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 OTOP3Q7RTS5 596 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 ACSF2Q96CM8 615 aaPredicted RBP22.19■■□□□ 1.14
CLN3-240ENST00000631023 TMEM8AQ9HCN3 771 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 CLUHO75153 1309 aa22.19■■□□□ 1.14
CLN3-240ENST00000631023 MTMR11A4FU01 709 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 TACC1O75410 805 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 VNN1O95497 513 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 FGFR1OPO95684 399 aaKnown RBP22.18■■□□□ 1.14
CLN3-240ENST00000631023 MBD3O95983 291 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 NFE2Q16621 373 aaPredicted RBP22.18■■□□□ 1.14
CLN3-240ENST00000631023 TCERG1LQ5VWI1 586 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 GRASPQ7Z6J2 395 aaPredicted RBP22.18■■□□□ 1.14
CLN3-240ENST00000631023 PLCD3Q8N3E9 789 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 CCDC150Q8NCX0 1101 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 GPT2Q8TD30 523 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 DUSP9Q99956 384 aaKnown RBP22.18■■□□□ 1.14
CLN3-240ENST00000631023 IMPG2Q9BZV3 1241 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 SNX25Q9H3E2 840 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 MMRN2Q9H8L6 949 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 CD320Q9NPF0 282 aa22.18■■□□□ 1.14
CLN3-240ENST00000631023 HLA-DRAP01903 254 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 WARSP23381 471 aaKnown RBP22.17■■□□□ 1.14
CLN3-240ENST00000631023 GNL1P36915 607 aaPredicted RBP22.17■■□□□ 1.14
CLN3-240ENST00000631023 ALDH1A3P47895 512 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 TUFMP49411 452 aaKnown RBP22.17■■□□□ 1.14
CLN3-240ENST00000631023 STX17P56962 302 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 DCAF17Q5H9S7 520 aaPredicted RBP22.17■■□□□ 1.14
CLN3-240ENST00000631023 KRT39Q6A163 491 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 FRMD5Q7Z6J6 570 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 TDRD5Q8NAT2 981 aaKnown RBP22.17■■□□□ 1.14
CLN3-240ENST00000631023 ATAD1Q8NBU5 361 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 SPPL2BQ8TCT7 592 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 RWDD2AQ9UIY3 292 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 MYH10P35580 1976 aa22.17■■□□□ 1.14
CLN3-240ENST00000631023 GNA14O95837 355 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 PTPN2P17706 415 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 SP100P23497 879 aaPredicted RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 TWF1Q12792 350 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 CCDC40Q4G0X9 1142 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 INTS6LQ5JSJ4 861 aaKnown RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 IQCEQ6IPM2 695 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 LRRTM3Q86VH5 581 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 OSTM1Q86WC4 334 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 KBTBD7Q8WVZ9 684 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 ZNF512Q96ME7 567 aaPredicted RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP22.16■■□□□ 1.14
CLN3-240ENST00000631023 CDH9Q9ULB4 789 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 PCDHB5Q9Y5E4 795 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 VNN2O95498 520 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 ASS1P00966 412 aaKnown RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 ACAT1P24752 427 aaKnown RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 OR6B3Q8NGW1 331 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 DNMT3BQ9UBC3 853 aaKnown RBP22.16■■□□□ 1.14
CLN3-240ENST00000631023 DACH1Q9UI36 760 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 SLC27A5Q9Y2P5 690 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 YIPF1Q9Y548 306 aa22.16■■□□□ 1.14
CLN3-240ENST00000631023 MUC3AQ02505 3323 aa22.15■■□□□ 1.14
CLN3-240ENST00000631023 C2CD4DB7Z1M9 353 aa22.15■■□□□ 1.14
CLN3-240ENST00000631023 FSHRP23945 695 aa22.15■■□□□ 1.14
CLN3-240ENST00000631023 MXI1P50539 228 aa22.15■■□□□ 1.14
CLN3-240ENST00000631023 EPHB3P54753 998 aa22.15■■□□□ 1.14
CLN3-240ENST00000631023 MAPRE1Q15691 268 aaKnown RBP22.15■■□□□ 1.14
CLN3-240ENST00000631023 PABPC1LQ4VXU2 614 aaKnown RBP22.15■■□□□ 1.14
CLN3-240ENST00000631023 MRPL45Q9BRJ2 306 aaKnown RBP22.15■■□□□ 1.14
CLN3-240ENST00000631023 SRRTQ9BXP5 876 aaKnown RBP22.15■■□□□ 1.14
CLN3-240ENST00000631023 ABI2Q9NYB9 513 aaPredicted RBP22.15■■□□□ 1.14
CLN3-240ENST00000631023 PTPRDP23468 1912 aa22.14■■□□□ 1.14
CLN3-240ENST00000631023 PDGFRBP09619 1106 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 LMO2P25791 158 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 GBP2P32456 591 aaPredicted RBP22.14■■□□□ 1.13
CLN3-240ENST00000631023 NLRP12P59046 1061 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 MGAT5BQ3V5L5 792 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 RNF135Q8IUD6 432 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 ZDHHC14Q8IZN3 488 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 FBXL13Q8NEE6 735 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 TAS1R2Q8TE23 839 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 SYT15Q9BQS2 421 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 CRISPLD1Q9H336 500 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 HCFC1R1Q9NWW0 138 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 GTF3C4Q9UKN8 822 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 ASB3Q9Y575 518 aa22.14■■□□□ 1.13
CLN3-240ENST00000631023 LEMD2Q8NC56 503 aa22.13■■□□□ 1.13
CLN3-240ENST00000631023 SEPT5Q99719 369 aaPredicted RBP22.13■■□□□ 1.13
CLN3-240ENST00000631023 CORO1BQ9BR76 489 aa22.13■■□□□ 1.13
CLN3-240ENST00000631023 ABCB6Q9NP58 842 aa22.13■■□□□ 1.13
CLN3-240ENST00000631023 AVENQ9NQS1 362 aaPredicted RBP22.13■■□□□ 1.13
CLN3-240ENST00000631023 ZFP37Q9Y6Q3 630 aaPredicted RBP22.13■■□□□ 1.13
CLN3-240ENST00000631023 RHOP08100 348 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 CCDC192P0DO97 292 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 HAPLN1P10915 354 aaPredicted RBP22.12■■□□□ 1.13
CLN3-240ENST00000631023 NTHL1P78549 312 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 WDR44Q5JSH3 913 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 CYP4A22Q5TCH4 519 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 FAM171BQ6P995 826 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 C4orf50Q6ZRC1 276 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 GET4Q7L5D6 327 aaPredicted RBP22.12■■□□□ 1.13
CLN3-240ENST00000631023 ITIH5Q86UX2 942 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 SPATA2LQ8IUW3 424 aaPredicted RBP22.12■■□□□ 1.13
CLN3-240ENST00000631023 TTC9BQ8N6N2 239 aa22.12■■□□□ 1.13
CLN3-240ENST00000631023 PI4K2AQ9BTU6 479 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms